Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56150.1 | OQU77830 | AT1G50030.1 | 23524850 |
| AT3G56150.1 | KXG34696 | AT3G57290.1 | 11029466 |
| AT3G56150.1 | EER92981 | AT3G61140.1 | 11029466 |
| AT3G56150.1 | OQU81583 | AT4G14110.1 | 11029466 |
| AT3G56150.1 | EER91898 | AT5G25780.1 | 11029466 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 5.81 | 62.65 |
| KXG35906 | Sorghum | cytosol | 63.69 | 61.09 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 58.77 | 58.97 |
| CDY65406 | Canola | cytosol | 51.73 | 56.88 |
| CDY16358 | Canola | cytosol | 52.51 | 56.35 |
| CDX72169 | Canola | cytosol | 52.4 | 56.23 |
| CDY27241 | Canola | cytosol | 53.3 | 55.02 |
| Bra022520.1-P | Field mustard | cytosol | 52.96 | 54.8 |
| KRH68073 | Soybean | endoplasmic reticulum | 56.2 | 54.32 |
| AT3G56150.1 | Thale cress | cytosol | 54.53 | 54.22 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 56.98 | 53.91 |
| Bra007220.1-P | Field mustard | cytosol | 53.74 | 53.74 |
| KRH41811 | Soybean | cytosol | 55.53 | 53.67 |
| KRH60516 | Soybean | endoplasmic reticulum | 55.31 | 53.51 |
| PGSC0003DMT400078176 | Potato | cytosol | 54.3 | 53.17 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 53.63 | 53.1 |
| PGSC0003DMT400046928 | Potato | cytosol | 54.64 | 53.04 |
| CDY06037 | Canola | cytosol | 43.24 | 53.01 |
| Solyc01g102600.2.1 | Tomato | cytosol | 20.89 | 52.38 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 20.78 | 52.25 |
| CDX71953 | Canola | cytosol | 46.26 | 50.49 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 46.26 | 50.12 |
| AT3G22860.1 | Thale cress | cytosol | 44.8 | 49.81 |
| Solyc01g102560.2.1 | Tomato | nucleus | 15.98 | 46.13 |
| Solyc01g102590.2.1 | Tomato | nucleus | 18.21 | 39.76 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | UniProt:C5YLN6 | ncoils:Coil | EnsemblPlants:EES13928 | ProteinID:EES13928 |
| ProteinID:EES13928.2 | InterPro:EIF3C | InterPro:EIF3C_N_dom | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 |
| InterPro:IPR000717 | InterPro:IPR036388 | HAMAP:MF_03002 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF05470 |
| PFscan:PS50250 | PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | EnsemblPlantsGene:SORBI_3007G144100 | SUPFAM:SSF46785 |
| UniParc:UPI00081ACD24 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:+:57395445..57400833
Molecular Weight (calculated)
101594.0 Da
IEP (calculated)
6.482
GRAVY (calculated)
-0.505
Length
895 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSRFWLSQ GDSDSDSDDE EGKSEETFSD VALPPPRRDD DGLRKYLVSS SDSDELDTHR VVRPLKVKLN EKMWSTVEQI RNAMKINDWV SLQGCFENLN
101: KQLEKVVRVS EFNKLPNAYI LALMLLEDFL AESFANNKEA KKNMSTSNAK ALYSMKQNLK RNNRQYAELI LKCRENPECF NKEDANDNSK DDSDDDYDDI
201: EINRLSSNEG KDDNHEGNQK EGLGEKEKVE KDKLMDKQFP KDPSEITWEI VDKKLKEIVA SRGRKGTGRV ERVDQLMFLT GVAKTPSQKL EVLCHVISAQ
301: FDINPSLLGH MPINVWKSCV NNILHVLDIL QQYPNIVIGN LVEPMEEISN GADYDGTIRV SGDLVAFIER LDSEYFKSLQ CSDPHAKDYV ERLRDEQLFI
401: VAAQNIQVYL ERIGNFRAAA KVALRQVELI YYKPEEVYGA MRNLAEQAEN EDGDANAIDG CSGPTPFVVI PEVVNRRPIF PPSSRTLMDG LTSLIYKYGD
501: ERTKARAMLC DIYHRAISDE FTVARDLLLM SNLQDGIKLM DISSQILFNR VVAQLGLCAF RAGLITESHD CISELYATGR VKELLAQGVC YGRYHEKTPE
601: QERLEKRQQM PYHMHINHEL LEATYFISAM LIEVPNMVAS PYGNRKPVNK TFRGLLQFSE RMTFVGPPEN IRGHVMAAAR ALKKGDYQKA FDVISSLEIW
701: KLLRNTEHVL DLLKLKIKEA ALKTYLISYS ACYGSISLEK LSVMFDLTQS HTQNIVSKMM IQEELHARWD QPTRSIVFQN AEQTRLQRLL SQMADNVSVI
801: AERNEMAYGG KSLAEEVPRR RVDNQDPSKL GRLQKNLVPL QRPGYTRGGG GFTQAGLMHP KDSSSKGLHG NYGRVNKHAY PSVAGMVNLK KAVGV
101: KQLEKVVRVS EFNKLPNAYI LALMLLEDFL AESFANNKEA KKNMSTSNAK ALYSMKQNLK RNNRQYAELI LKCRENPECF NKEDANDNSK DDSDDDYDDI
201: EINRLSSNEG KDDNHEGNQK EGLGEKEKVE KDKLMDKQFP KDPSEITWEI VDKKLKEIVA SRGRKGTGRV ERVDQLMFLT GVAKTPSQKL EVLCHVISAQ
301: FDINPSLLGH MPINVWKSCV NNILHVLDIL QQYPNIVIGN LVEPMEEISN GADYDGTIRV SGDLVAFIER LDSEYFKSLQ CSDPHAKDYV ERLRDEQLFI
401: VAAQNIQVYL ERIGNFRAAA KVALRQVELI YYKPEEVYGA MRNLAEQAEN EDGDANAIDG CSGPTPFVVI PEVVNRRPIF PPSSRTLMDG LTSLIYKYGD
501: ERTKARAMLC DIYHRAISDE FTVARDLLLM SNLQDGIKLM DISSQILFNR VVAQLGLCAF RAGLITESHD CISELYATGR VKELLAQGVC YGRYHEKTPE
601: QERLEKRQQM PYHMHINHEL LEATYFISAM LIEVPNMVAS PYGNRKPVNK TFRGLLQFSE RMTFVGPPEN IRGHVMAAAR ALKKGDYQKA FDVISSLEIW
701: KLLRNTEHVL DLLKLKIKEA ALKTYLISYS ACYGSISLEK LSVMFDLTQS HTQNIVSKMM IQEELHARWD QPTRSIVFQN AEQTRLQRLL SQMADNVSVI
801: AERNEMAYGG KSLAEEVPRR RVDNQDPSKL GRLQKNLVPL QRPGYTRGGG GFTQAGLMHP KDSSSKGLHG NYGRVNKHAY PSVAGMVNLK KAVGV
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.