Factsheet for VIT_08s0007g07180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0109g00320.t01	Wine grape	cytosol	1.27	92.31
VIT_16s0039g01140.t01	Wine grape	cytosol	7.93	90.36
Solyc01g102600.2.1	Tomato	cytosol	28.12	74.51
Solyc01g102570.2.1	Tomato	cytosol, nucleus	28.01	74.44
PGSC0003DMT400046928	Potato	cytosol	71.88	73.75
PGSC0003DMT400078176	Potato	cytosol	70.61	73.09
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	69.77	73.01
GSMUA_Achr3P04920_001	Banana	cytosol	68.82	72.98
HORVU2Hr1G058390.1	Barley	cytosol	12.16	70.55
Os07t0124500-01	Rice	nucleus	68.39	69.12
Zm00001d002169_P006	Maize	cytosol	67.76	68.92
KXG35906	Sorghum	cytosol	67.97	68.92
Zm00001d002166_P004	Maize	cytosol	67.65	68.82
Zm00001d020935_P002	Maize	cytosol	58.88	67.68
TraesCS5D01G228100.1	Wheat	golgi, unclear	65.22	66.49
TraesCS5A01G220000.1	Wheat	nucleus	65.22	66.49
TraesCS5B01G219100.1	Wheat	nucleus	65.12	66.38
TraesCS5B01G410800.1	Wheat	cytosol	65.12	66.38
HORVU5Hr1G063770.2	Barley	nucleus	64.8	66.13
TraesCS5D01G416000.1	Wheat	cytosol	64.8	66.13
TraesCS5A01G406000.1	Wheat	cytosol	64.48	66.09
Solyc01g102560.2.1	Tomato	nucleus	21.46	65.48
HORVU2Hr1G058370.1	Barley	cytosol	12.58	65.38
HORVU5Hr1G098600.1	Barley	cytosol	63.95	65.26
Zm00001d002737_P002	Maize	vacuole	65.01	63.47
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	4.02	60.32
EES13928	Sorghum	cytosol	53.91	56.98
Solyc01g102590.2.1	Tomato	nucleus	23.78	54.88

Protein Annotations

EntrezGene:100252123	wikigene:100252123	MapMan:17.4.1.3.3	EMBL:AM483628	ProteinID:CAN81874	ProteinID:CAN81874.1
ProteinID:CCB55211	ProteinID:CCB55211.1	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	UniProt:F6HLF0
EMBL:FN595991	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717	EntrezGene:LOC100252123
wikigene:LOC100252123	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250
PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0001983EC5	ArrayExpress:VIT_08s0007g07180
EnsemblPlantsGene:VIT_08s0007g07180	EnsemblPlants:VIT_08s0007g07180.t01	unigene:Vvi.9026	InterPro:WH_DNA-bd_sf	RefSeq:XP_002281426	RefSeq:XP_002281426.1
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F6HLF0]

Coordinates

chr8:-:20821577..20826139

Molecular Weight (calculated)

107105.0 Da

IEP (calculated)

5.193

GRAVY (calculated)

-0.650

Length

946 amino acids

Sequence
(BLAST)

001: MSSRFWTAQG DSDTEEEESD YEDGVERGGA AGESAPHAGS RYLQANASDS DDSDGQKRVV RSAKDKRFEE MSATVDQMKN AMKINDWVSL QESFDKINKQ
101: LEKVMRVTES DKVPTLYIKA LVMLEDFLSQ ALANKDAKKK MSSSNAKALN SMKQKLKKNN KQYEDLINKY REHPESEEEG DEDEEMEEDE DSGSEFEEDP
201: SKIAMRSDSE EDEEDGEDRE DSAAEAGGGW EKKMSKKDKL MDKQFMKDPS EITWDTVNKK FKEIVAVRGR KGTGRIEQVE QLTFLTRVAK TPAQKLEILF
301: SVVSAQFDVN PSLSGHMPIN VWKKCVQNML VILDILVQHS NILVDDVVEP EENETQKGAD YKGTIRVWGN LVAFLERIDV EFFKSLQCID PHTREYVERL
401: RDEPLFLVLA QNVQDYLERV GDFKAASKVA LRRVELIYYK PQEVYDAMKN LAEQTEDTEN GESEAGEEPR VEESRGPPAF VVTPEVVPRK PTFPENSRTL
501: MDILVSLIYN HGDERTKARA MLCDIYHHAI LDEFSTARDL LLMSHLQDNV QHMDISTQIL FNRAMAQLGL CAFRVGLIAE GHGCLSELYS GGRVKELLAQ
601: GVSQSRYHEK TPEQERIERR RQMPYHMHIN LELLEGVHLI CAMLLEVPNM AANTHDAKRK VISKTFRRLL EVSERQTFTG PPENVRDHVM AATRALSKGD
701: FQKAFDVIKS LDFWKLLRNR EDVLEMLRAK IKEEALRTYL FTYSLSYNTL SLDQLTKMFD LSETLTHSII SKMMVMEELH ASWDQPTRCI VFHDVEHTRL
801: QALSFQLTDK LTILAENNER AYEAKIGGGG LDLPLRRRDG QDYAGAASVG GKWQDNFSFS QGRQGGVRTG YGVGGRPLGP GSSAGTFSRD RGGQSRGTGG
901: YSGGYQSTRY QDAAYGRTAY QTSSAVRGSQ MDTSTRMVSL NRGVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.