Factsheet for Zm00001d002166_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003685_P001
Zm00001d005238_P001
Zm00001d010441_P001
Zm00001d014873_P001
Zm00001d019182_P001
Zm00001d020479_P005
Zm00001d020588_P001
Zm00001d020635_P001
Zm00001d025407_P001
Zm00001d027359_P001
Zm00001d029511_P001
Zm00001d029554_P001
Zm00001d029828_P001
Zm00001d030011_P001
Zm00001d031414_P001
Zm00001d037950_P004
Zm00001d037951_P001
Zm00001d040830_P001
Zm00001d048502_P002
Zm00001d051050_P001
Zm00001d051103_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Zm00001d037950_P004	AT1G50030.1	23524850
AT3G56150.1	Zm00001d037951_P001	AT1G50030.1	23524850
AT3G56150.1	Zm00001d005238_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d010441_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d014873_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d019182_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020479_P005	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020588_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020635_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029511_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029554_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029828_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d031414_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d040830_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051050_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051103_P004	AT3G57290.1	11029466
AT3G56150.1	Zm00001d027359_P001	AT3G61140.1	11029466
AT3G56150.1	Zm00001d048502_P002	AT3G61140.1	11029466
AT3G56150.1	Zm00001d003685_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d025407_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d030011_P001	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002169_P006	Maize	cytosol	98.82	98.82
KXG35906	Sorghum	cytosol	95.48	95.18
Zm00001d020935_P002	Maize	cytosol	79.46	89.79
Zm00001d002737_P002	Maize	vacuole	90.97	87.31
Os07t0124500-01	Rice	nucleus	84.3	83.76
TraesCS5A01G220000.1	Wheat	nucleus	80.97	81.14
TraesCS5D01G228100.1	Wheat	golgi, unclear	80.86	81.03
TraesCS5B01G219100.1	Wheat	nucleus	80.75	80.93
HORVU5Hr1G063770.2	Barley	nucleus	80.22	80.47
HORVU2Hr1G058390.1	Barley	cytosol	13.98	79.75
TraesCS5B01G410800.1	Wheat	cytosol	78.49	78.66
TraesCS5D01G416000.1	Wheat	cytosol	78.39	78.64
TraesCS5A01G406000.1	Wheat	cytosol	77.85	78.44
HORVU5Hr1G098600.1	Barley	cytosol	77.42	77.67
HORVU2Hr1G058370.1	Barley	cytosol	14.73	75.27
GSMUA_Achr3P04920_001	Banana	cytosol	68.82	71.75
VIT_16s0039g01140.t01	Wine grape	cytosol	6.13	68.67
VIT_08s0007g07180.t01	Wine grape	cytosol	68.82	67.65
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	4.52	66.67
CDY65406	Canola	cytosol	58.17	66.46
PGSC0003DMT400078176	Potato	cytosol	64.62	65.75
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	63.76	65.6
CDY16358	Canola	cytosol	58.71	65.47
CDX72169	Canola	cytosol	58.6	65.35
Solyc01g102570.2.1	Tomato	cytosol, nucleus	24.95	65.17
PGSC0003DMT400046928	Potato	cytosol	64.41	64.97
KRH41811	Soybean	cytosol	64.52	64.79
Solyc01g102600.2.1	Tomato	cytosol	24.84	64.71
KRH60516	Soybean	endoplasmic reticulum	64.19	64.54
KRH68073	Soybean	endoplasmic reticulum	64.19	64.47
Bra022520.1-P	Field mustard	cytosol	59.46	63.93
CDY27241	Canola	cytosol	59.46	63.78
Bra007220.1-P	Field mustard	cytosol	60.75	63.13
AT3G56150.1	Thale cress	cytosol	61.08	63.11
Solyc01g102560.2.1	Tomato	nucleus	20.75	62.26
CDY06037	Canola	cytosol	47.53	60.55
CDX71953	Canola	cytosol	51.08	57.93
Bra007396.1-P	Field mustard	cytosol, mitochondrion	51.18	57.63
AT3G22860.1	Thale cress	cytosol	48.49	56.02
Solyc01g102590.2.1	Tomato	nucleus	23.12	52.44

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100272475	MapMan:17.4.1.3.3	UniProt:A0A1D6DXB0	ncoils:Coil	InterPro:EIF3C
InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717	InterPro:IPR036388
HAMAP:MF_03002	ProteinID:ONM13294.1	ProteinID:ONM13296.1	ProteinID:ONM13297.1	ProteinID:ONM13298.1	ProteinID:ONM13300.1
ProteinID:ONM13301.1	ProteinID:ONM13304.1	ProteinID:ONM13306.1	ProteinID:ONM13307.1	ProteinID:ONM13308.1	ProteinID:ONM13309.1
ProteinID:ONM13312.1	ProteinID:ONM13315.1	ProteinID:ONM13316.1	ProteinID:ONM13318.1	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI000220F785	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d002166	EnsemblPlants:Zm00001d002166_P004	EnsemblPlants:Zm00001d002166_T004
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit C

Coordinates

chr2:+:7053617..7066223

Molecular Weight (calculated)

106089.0 Da

IEP (calculated)

5.233

GRAVY (calculated)

-0.729

Length

930 amino acids

Sequence
(BLAST)

001: MASRFWGQGD SESEEEEVEE VESEQGSDSD DDGGRGGAGR GAQNRYLKNQ EDDSDESDTG HRVIRSLRDK RNEEMRSIVD QMRNAMKIND WVSLQESFEK
101: LNKHLEKVVR VNESTEVPKM YIKALVLLED FLAEALANKE ARKKMSSSNS KALNAMRQKL KKNNKQYEEQ IQKCREHPES FEDEAADDKD VDDDDADESD
201: AEIEDPDKIA MSESEEEQDE EDDDKDGWEQ KRSKKDKLMD KQFLKDPSEI TWDIVDKKLK EIIASRGKKG TGRIERVEQL TFLTRVAKTP AQKLEILFHV
301: ISAQFDVNPS LLGHMPVNVW KKCVNNMLLV LDILQQYPNI VVDTSFEPDE NETQKGADYN GTIHVVGDLV AFLERLDSEF LKTLQCTDPY TKDYVQRLRE
401: EPLFLVVAQN VQDYLERVGN FKAAAKVALR RVELVYYKPQ EVYDAMRKLA EQPEDCVDDD DAEAGDEHKA VDDNRGPSPF VVIPEAVHRK PTFPESGRTL
501: MDGLMFLIYK YGDERTKARA MLCDIYHHAI SDEFSVARDL LLMSHLQDGI QLMDISSQIL FNRVMAQLGL CAFRAGLINE AHGCLTELYS TGRVKELLAQ
601: GVQQSRYHEK TPEQERLERR RQMPYHMHIN LELLEATHLI CAMLIEVPNM AASTYDKRRP MSKTFRRLLE VSERQTFVGP PENVRDHVMA ATRALNKGDH
701: QKAFSVINSL EIWKLLRNRE HVLEMLELKI KEEALRTYLF SYSSSYESLS LNQLTTMFDL SEQHAHSIVS KMMMHEELHA SWDQPTKCIV FHSVDQTRLQ
801: GLLFQMADKL SVLVEINERA YEARTGGTLE GVPPRRRGEG QDNMGKWQDN FVSSQGRQGG GNRFGYSGRG AISGQSGGGH QRDRGNQGYR GGYGGVSRFQ
901: DARGRNQSIP SGRGGDGGAR MVNLNRMGRV

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.