Factsheet for Os02t0123300-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0116500-01
Os04t0428900-01
Os05t0235300-01
Os07t0167000-01
Os07t0222300-01
Os07t0503700-00
Os10t0569200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Os05t0235300-01	AT1G50030.1	23524850
AT3G56150.1	Os07t0167000-01	AT3G57290.1	11029466
AT3G56150.1	Os07t0222300-01	AT3G57290.1	11029466
AT3G56150.1	Os07t0503700-00	AT3G57290.1	11029466
AT3G56150.1	Os03t0116500-01	AT3G61140.1	11029466
AT3G56150.1	Os04t0428900-01	AT4G14110.1	11029466
AT3G56150.1	Os10t0569200-01	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01140.t01	Wine grape	cytosol	17.46	13.25
Solyc01g102600.2.1	Tomato	cytosol	53.97	9.52
Solyc01g102570.2.1	Tomato	cytosol, nucleus	52.38	9.27
Os07t0124500-01	Rice	nucleus	84.13	5.66
Zm00001d020935_P002	Maize	cytosol	68.25	5.22
KXG35906	Sorghum	cytosol	68.25	4.61
HORVU5Hr1G063770.2	Barley	nucleus	66.67	4.53
TraesCS5B01G219100.1	Wheat	nucleus	66.67	4.53
TraesCS5A01G220000.1	Wheat	nucleus	66.67	4.53
TraesCS5D01G228100.1	Wheat	golgi, unclear	66.67	4.53
Zm00001d002166_P004	Maize	cytosol	66.67	4.52
Zm00001d002169_P006	Maize	cytosol	65.08	4.41
HORVU2Hr1G058370.1	Barley	cytosol	12.7	4.4
TraesCS5B01G410800.1	Wheat	cytosol	60.32	4.09
CDY27241	Canola	cytosol	55.56	4.04
VIT_08s0007g07180.t01	Wine grape	cytosol	60.32	4.02
Zm00001d002737_P002	Maize	vacuole	60.32	3.92
Bra007220.1-P	Field mustard	cytosol	55.56	3.91
KRH60516	Soybean	endoplasmic reticulum	57.14	3.89
AT3G56150.1	Thale cress	cytosol	55.56	3.89
KRH41811	Soybean	cytosol	57.14	3.89
Bra022520.1-P	Field mustard	cytosol	52.38	3.82
CDY65406	Canola	cytosol	49.21	3.81
TraesCS5A01G406000.1	Wheat	cytosol	55.56	3.79
TraesCS5D01G416000.1	Wheat	cytosol	55.56	3.78
GSMUA_Achr3P04920_001	Banana	cytosol	52.38	3.7
KRH68073	Soybean	endoplasmic reticulum	53.97	3.67
HORVU5Hr1G098600.1	Barley	cytosol	53.97	3.67
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	52.38	3.65
PGSC0003DMT400078176	Potato	cytosol	52.38	3.61
AT3G22860.1	Thale cress	cytosol	46.03	3.6
PGSC0003DMT400046928	Potato	cytosol	52.38	3.58
CDY06037	Canola	cytosol	38.1	3.29
CDX72169	Canola	cytosol	42.86	3.24
CDY16358	Canola	cytosol	41.27	3.12
Bra007396.1-P	Field mustard	cytosol, mitochondrion	39.68	3.03
HORVU2Hr1G058390.1	Barley	cytosol	4.76	1.84
CDX71953	Canola	cytosol	22.22	1.71
Solyc01g102590.2.1	Tomato	nucleus	4.76	0.73
Solyc01g102560.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

MapMan:35.2	UniProt:A0A0P0VEC0	ProteinID:BAS76733.1	ncoils:Coil	InterPro:EIF3C_N_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0031369	EnsemblPlantsGene:Os02g0123300	EnsemblPlants:Os02t0123300-00	PFAM:PF05470	PANTHER:PTHR13937	UniParc:UPI000393C452
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit 8, N-terminal domain containing protein. (Os02t0123300-00)

Coordinates

chr2:+:1219823..1220052

Molecular Weight (calculated)

7406.0 Da

IEP (calculated)

3.878

GRAVY (calculated)

-1.960

Length

63 amino acids

Sequence
(BLAST)

1: MSSSNAKALN AMKQKLKKNN KQYENLIQEC REHPERFEDD DVEDKDDDDE TEDEDSDAEE DPE

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.