CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67853
CDX72053
CDX76792
CDX88939
CDY01192
CDY06117
CDY12369
CDY12734
CDY27125
CDY28135
CDY29333
CDY30993
CDY34755
CDY36167
CDY45599
CDY45683
CDY46271
CDY50976
CDY52333
CDY65304
CDY71256

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	CDY28135	AT1G50030.1	23524850
AT3G56150.1	CDY29333	AT1G50030.1	23524850
AT3G56150.1	CDY46271	AT1G50030.1	23524850
AT3G56150.1	CDY50976	AT1G50030.1	23524850
AT3G56150.1	CDY71256	AT1G50030.1	23524850
AT3G56150.1	CDX72053	AT3G57290.1	11029466
AT3G56150.1	CDX88939	AT3G57290.1	11029466
AT3G56150.1	CDY06117	AT3G57290.1	11029466
AT3G56150.1	CDY30993	AT3G57290.1	11029466
AT3G56150.1	CDX67853	AT3G61140.1	11029466
AT3G56150.1	CDY45683	AT3G61140.1	11029466
AT3G56150.1	CDY52333	AT3G61140.1	11029466
AT3G56150.1	CDY65304	AT3G61140.1	11029466
AT3G56150.1	CDY01192	AT4G14110.1	11029466
AT3G56150.1	CDY12369	AT4G14110.1	11029466
AT3G56150.1	CDY12734	AT4G14110.1	11029466
AT3G56150.1	CDY27125	AT4G14110.1	11029466
AT3G56150.1	CDX76792	AT5G25780.1	11029466
AT3G56150.1	CDY34755	AT5G25780.1	11029466
AT3G56150.1	CDY36167	AT5G25780.1	11029466
AT3G56150.1	CDY45599	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16358	Canola	cytosol	98.68	98.68
CDY27241	Canola	cytosol	98.44	94.69
CDY65406	Canola	cytosol	87.65	89.8
AT3G56150.1	Thale cress	cytosol	87.41	81.0
CDY06037	Canola	cytosol	63.31	72.33
VIT_16s0039g01140.t01	Wine grape	cytosol	7.19	72.29
AT3G22860.1	Thale cress	cytosol	67.27	69.69
CDX71953	Canola	cytosol	67.99	69.15
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	70.74	65.27
PGSC0003DMT400078176	Potato	cytosol	71.1	64.88
PGSC0003DMT400046928	Potato	cytosol	71.22	64.43
KRH68073	Soybean	endoplasmic reticulum	71.22	64.15
KRH60516	Soybean	endoplasmic reticulum	70.98	64.0
KRH41811	Soybean	cytosol	70.74	63.71
Solyc01g102560.2.1	Tomato	nucleus	23.02	61.94
GSMUA_Achr3P04920_001	Banana	cytosol	66.07	61.77
Solyc01g102570.2.1	Tomato	cytosol, nucleus	25.42	59.55
Solyc01g102600.2.1	Tomato	cytosol	25.42	59.38
KXG35906	Sorghum	cytosol	65.83	58.84
Zm00001d020935_P002	Maize	cytosol	58.03	58.81
Zm00001d002169_P006	Maize	cytosol	65.47	58.71
Zm00001d002166_P004	Maize	cytosol	65.35	58.6
Os07t0124500-01	Rice	nucleus	65.71	58.55
TraesCS5A01G220000.1	Wheat	nucleus	64.99	58.41
TraesCS5D01G228100.1	Wheat	golgi, unclear	64.87	58.3
HORVU2Hr1G058390.1	Barley	cytosol	11.39	58.28
HORVU5Hr1G063770.2	Barley	nucleus	64.75	58.25
TraesCS5B01G219100.1	Wheat	nucleus	64.75	58.19
TraesCS5D01G416000.1	Wheat	cytosol	64.15	57.71
TraesCS5B01G410800.1	Wheat	cytosol	64.03	57.54
TraesCS5A01G406000.1	Wheat	cytosol	63.67	57.53
HORVU5Hr1G098600.1	Barley	cytosol	63.19	56.85
HORVU2Hr1G058370.1	Barley	cytosol	11.87	54.4
Zm00001d002737_P002	Maize	vacuole	62.59	53.87
EES13928	Sorghum	cytosol	56.23	52.4
Solyc01g102590.2.1	Tomato	nucleus	25.3	51.46
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.24	42.86

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	GO:A0A078C7M4	EnsemblPlants:CDX72169	ProteinID:CDX72169	ProteinID:CDX72169.1
ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00155996001	InterPro:IPR000717	InterPro:IPR036388
HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EF443A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaC08g27050D

Coordinates

chrLK031795:+:2797127..2800617

Molecular Weight (calculated)

95875.4 Da

IEP (calculated)

5.728

GRAVY (calculated)

-0.586

Length

834 amino acids

Sequence
(BLAST)

001: MSRFFAQGGS DSEDESDIEE EIQEVQNNDI NNRYLTDNSD DDDDIDTKRV IKPTKDKRFE EMTHTVEQMK NAMKINDWVS LQENFDKVNK QLEKVMRITE
101: AVKPPTLYIK TLVMLEDFLN EALANKEAKK KMSPSNSKAL NAMRQKLKKN NKLYEEDINK YREAPEEVDE TTDTRWETML NKKDKQMEKL LSKDPKEITW
201: DWVNQKFKEI MAARGRKGTA RFDLVDQLTH LTKIAKTPAQ KLEILFSVIS AQFDVNPGLS GHMPIKVWKK CVLNMLTILD ILVKYTNIVV DDTIEPDENE
301: TSKPADYDGT IRVWGNLVAF IERIDTEFFK SLQSIDPHTR EYVERLRDEP MFLALAQNIQ DYFERMGDFK AAAKVALRRV ESIYYKPQEV YEAMRKLAEL
401: VEEDEEAEDA EEESGPISSF IVVPEVVPRK PTFPESGRAM MDLLVSLIYR NGDERTKARA MLCDIYHHAL MDNFGTARDL LLMSHLQDNI QHMDISTQIL
501: FNRTMAQLGL CAFRVGMITE SHSCLSELYS GQRVRELLAQ GVSQSRYHEK TPEQERMERR RQMPYHMHIN LELLEAVHLI GAMLLEVPNM AANSLEARRR
601: VISKNFRRLL EISERQAFNA PPENVRDHVM AATRALTKGD FQTAFEVLNS LEVWRMLKNR DSILEMVKAR IKEEALRTYL FTYSSSYESL SLEQLAKMFD
701: VTEAQVHSIV SKMMINEELH ASWDQPTRCI VFHEVQHSRL QSLAFQLTEK LSVLAESNER AMEARTGGGG LDLSSRRRDN SQDYAGAASG GQPRDWSGQN
801: RGGGYAARAG SGNRGGMQMD GSTRMVSLNR GVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.