Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 94.42 | 95.46 |
| PGSC0003DMT400046928 | Potato | cytosol | 80.09 | 79.39 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 6.89 | 75.9 |
| CDY65406 | Canola | cytosol | 63.79 | 71.62 |
| CDX72169 | Canola | cytosol | 64.88 | 71.1 |
| CDY16358 | Canola | cytosol | 64.66 | 70.86 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 73.09 | 70.61 |
| KRH68073 | Soybean | endoplasmic reticulum | 70.24 | 69.33 |
| Bra022520.1-P | Field mustard | cytosol | 65.32 | 69.02 |
| CDY27241 | Canola | cytosol | 65.21 | 68.74 |
| KRH60516 | Soybean | endoplasmic reticulum | 69.37 | 68.54 |
| KRH41811 | Soybean | cytosol | 69.26 | 68.36 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 66.08 | 67.71 |
| AT3G56150.1 | Thale cress | cytosol | 66.52 | 67.56 |
| HORVU2Hr1G058390.1 | Barley | cytosol | 12.04 | 67.48 |
| Bra007220.1-P | Field mustard | cytosol | 65.86 | 67.26 |
| CDY06037 | Canola | cytosol | 53.17 | 66.58 |
| Zm00001d002169_P006 | Maize | cytosol | 65.97 | 64.84 |
| Zm00001d002166_P004 | Maize | cytosol | 65.75 | 64.62 |
| KXG35906 | Sorghum | cytosol | 65.75 | 64.42 |
| Os07t0124500-01 | Rice | nucleus | 65.86 | 64.32 |
| Zm00001d020935_P002 | Maize | cytosol | 57.44 | 63.79 |
| HORVU2Hr1G058370.1 | Barley | cytosol | 12.69 | 63.74 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 57.44 | 63.56 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 64.0 | 63.11 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 64.0 | 63.04 |
| TraesCS5D01G228100.1 | Wheat | golgi, unclear | 63.9 | 62.93 |
| TraesCS5B01G219100.1 | Wheat | nucleus | 63.79 | 62.82 |
| TraesCS5B01G410800.1 | Wheat | cytosol | 63.35 | 62.39 |
| CDX71953 | Canola | cytosol | 55.8 | 62.2 |
| TraesCS5A01G406000.1 | Wheat | cytosol | 62.47 | 61.86 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 62.58 | 61.7 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 62.14 | 61.27 |
| AT3G22860.1 | Thale cress | cytosol | 52.95 | 60.12 |
| Zm00001d002737_P002 | Maize | vacuole | 62.8 | 59.24 |
| EES13928 | Sorghum | cytosol | 53.17 | 54.3 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 3.61 | 52.38 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102595553 | MapMan:17.4.1.3.3 | ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom |
| GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000717 | InterPro:IPR036388 | UniProt:M1CZJ7 |
| HAMAP:MF_03002 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF05470 | EnsemblPlantsGene:PGSC0003DMG400030412 | PGSC:PGSC0003DMG400030412 |
| EnsemblPlants:PGSC0003DMT400078176 | PFscan:PS50250 | PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI000295A077 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_006350770.1 | SEG:seg | : |
Description
Translation-initiation factor 3 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400030412]
Coordinates
chr6:-:56645024..56649683
Molecular Weight (calculated)
103727.0 Da
IEP (calculated)
5.140
GRAVY (calculated)
-0.635
Length
914 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRFWTQGD SETEEEEESD YEQQDDEPAE TTKTDGGSRY LAADDSDSDE SDGQKRVVRS AKDKRFDELS ATVDQMKNAM KINDWVSLQE TFDKINKQLE
101: KVMRITEAAR APNLYIKSLV ILEDFLTQAL ANKEAKKKMS SSNAKALNSM KQKLKKNNKQ YEELINKYRE NPPVSEDEGG DDEESEEDEE EEDFEEDPTK
201: IAYASDDDPN RGPDPVNEWE IILNKKDKLM DKQFKDPSQI TWDIVDKKFK EIVASRGRKG TGRIELVEQL TFLTKVAKTP AQKLEILFSV VSAQFDVNPS
301: LSGHMPVNVW KKCVQNVLTI LDMLTQYPNI VVDDMVEPDE NETQKGSDYT GTIRIWGNLV AYVEKIDVEF FKSLQVIDPH TREYVERLRD EPLFLVLAQN
401: VQDYLVRVGD TRAAAKVALK QVEFIYYKPQ EVYDAMRKLA ELAEGEGEGE SADENKVAEE SKGPLAFVPT PELVPRKPSF EEGSRSLMDV LVSLIYKHGD
501: ERTKARAMLC DIYNHALFDE FSVSRDLLLM SHLQDNIQHM DISTQILFNR AMAQLGLCAF RVGLITEAQG CLSELYSAGR VKELLAQGVS QSRYHEKTPE
601: QERIERRRQM PYHMHINLEL LEAVHLICAM LLEVPNMAAN SHDTRRKVIS KNFRRLLEIS ERQTFTGPPE NVRDHVMAAT RALKQGDFLK AFDVIKSLDM
701: WRLFKNKESV LEMVRAKIKE EALRTYLFTY SSSYNSLSLD QLAGMFDLSD KQVHSIVSKM IISEELHANW DQPTRCVVFH DVEHTRLQGL AFQLTEKLAI
801: LSETNERAME SRIGGGLEGL PPRRREGQDY AAAAAGGTGK WQDFSFSQGR QGSSGGRTGY NAGRFASGQA SRDRTGQARI HGGQGSRYQT NAAARGGHNM
901: DGSRMVNLNR GIRA
101: KVMRITEAAR APNLYIKSLV ILEDFLTQAL ANKEAKKKMS SSNAKALNSM KQKLKKNNKQ YEELINKYRE NPPVSEDEGG DDEESEEDEE EEDFEEDPTK
201: IAYASDDDPN RGPDPVNEWE IILNKKDKLM DKQFKDPSQI TWDIVDKKFK EIVASRGRKG TGRIELVEQL TFLTKVAKTP AQKLEILFSV VSAQFDVNPS
301: LSGHMPVNVW KKCVQNVLTI LDMLTQYPNI VVDDMVEPDE NETQKGSDYT GTIRIWGNLV AYVEKIDVEF FKSLQVIDPH TREYVERLRD EPLFLVLAQN
401: VQDYLVRVGD TRAAAKVALK QVEFIYYKPQ EVYDAMRKLA ELAEGEGEGE SADENKVAEE SKGPLAFVPT PELVPRKPSF EEGSRSLMDV LVSLIYKHGD
501: ERTKARAMLC DIYNHALFDE FSVSRDLLLM SHLQDNIQHM DISTQILFNR AMAQLGLCAF RVGLITEAQG CLSELYSAGR VKELLAQGVS QSRYHEKTPE
601: QERIERRRQM PYHMHINLEL LEAVHLICAM LLEVPNMAAN SHDTRRKVIS KNFRRLLEIS ERQTFTGPPE NVRDHVMAAT RALKQGDFLK AFDVIKSLDM
701: WRLFKNKESV LEMVRAKIKE EALRTYLFTY SSSYNSLSLD QLAGMFDLSD KQVHSIVSKM IISEELHANW DQPTRCVVFH DVEHTRLQGL AFQLTEKLAI
801: LSETNERAME SRIGGGLEGL PPRRREGQDY AAAAAGGTGK WQDFSFSQGR QGSSGGRTGY NAGRFASGQA SRDRTGQARI HGGQGSRYQT NAAARGGHNM
901: DGSRMVNLNR GIRA
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.