Factsheet for GSMUA_Achr3P04920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr4P01370_001
GSMUA_Achr7P21330_001
GSMUA_Achr8P11930_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	GSMUA_Achr4P01370_001	AT1G50030.1	23524850
AT3G56150.1	GSMUA_Achr7P21330_001	AT3G57290.1	11029466
AT3G56150.1	GSMUA_Achr11P...	AT3G61140.1	11029466
AT3G56150.1	GSMUA_Achr11P...	AT3G61140.1	11029466
AT3G56150.1	GSMUA_Achr8P11930_001	AT3G61140.1	11029466
AT3G56150.1	GSMUA_Achr2P20500_001	AT4G14110.1	11029466
AT3G56150.1	GSMUA_Achr11P...	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01140.t01	Wine grape	cytosol	7.62	81.93
HORVU2Hr1G058390.1	Barley	cytosol	13.45	73.62
KXG35906	Sorghum	cytosol	72.31	69.13
Zm00001d002169_P006	Maize	cytosol	71.97	69.03
Os07t0124500-01	Rice	nucleus	72.31	68.91
Zm00001d002166_P004	Maize	cytosol	71.75	68.82
VIT_08s0007g07180.t01	Wine grape	cytosol	72.98	68.82
HORVU2Hr1G058370.1	Barley	cytosol	14.01	68.68
Zm00001d020935_P002	Maize	cytosol	63.0	68.29
KRH68073	Soybean	endoplasmic reticulum	70.29	67.71
CDY65406	Canola	cytosol	61.44	67.32
TraesCS5A01G220000.1	Wheat	nucleus	69.96	67.24
TraesCS5D01G228100.1	Wheat	golgi, unclear	69.96	67.24
TraesCS5B01G219100.1	Wheat	nucleus	69.84	67.13
HORVU5Hr1G063770.2	Barley	nucleus	69.62	66.99
KRH41811	Soybean	cytosol	69.39	66.85
KRH60516	Soybean	endoplasmic reticulum	69.06	66.59
TraesCS5A01G406000.1	Wheat	cytosol	68.83	66.52
TraesCS5B01G410800.1	Wheat	cytosol	68.95	66.27
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	67.15	66.26
PGSC0003DMT400078176	Potato	cytosol	67.71	66.08
CDX72169	Canola	cytosol	61.77	66.07
CDY16358	Canola	cytosol	61.77	66.07
TraesCS5D01G416000.1	Wheat	cytosol	68.5	65.91
Solyc01g102570.2.1	Tomato	cytosol, nucleus	26.12	65.45
Solyc01g102600.2.1	Tomato	cytosol	26.12	65.27
PGSC0003DMT400046928	Potato	cytosol	67.26	65.08
HORVU5Hr1G098600.1	Barley	cytosol	67.49	64.94
CDY27241	Canola	cytosol	62.11	63.9
AT3G56150.1	Thale cress	cytosol	64.46	63.89
Bra022520.1-P	Field mustard	cytosol	61.66	63.58
Zm00001d002737_P002	Maize	vacuole	68.83	63.36
Bra007220.1-P	Field mustard	cytosol	62.78	62.57
Solyc01g102560.2.1	Tomato	nucleus	21.52	61.94
CDY06037	Canola	cytosol	49.89	60.96
EES13928	Sorghum	cytosol	58.97	58.77
Bra007396.1-P	Field mustard	cytosol, mitochondrion	54.04	58.35
CDX71953	Canola	cytosol	53.25	57.93
AT3G22860.1	Thale cress	cytosol	51.79	57.39
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.7	52.38
Solyc01g102590.2.1	Tomato	nucleus	23.88	51.95

Protein Annotations

MapMan:17.4.1.3.3	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369
GO:GO:0033290	EnsemblPlantsGene:GSMUA_Achr3G04920_001	EnsemblPlants:GSMUA_Achr3P04920_001	EnsemblPlants:GSMUA_Achr3T04920_001	InterPro:IPR000717	UniProt:M0SBW0
HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000295523F	InterPro:WH_DNA-bd_sf	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit C [Source:GMGC_GENE;Acc:GSMUA_Achr3G04920_001]

Coordinates

chr3:+:3186730..3192143

Molecular Weight (calculated)

100424.0 Da

IEP (calculated)

6.216

GRAVY (calculated)

-0.598

Length

892 amino acids

Sequence
(BLAST)

001: MASRFWTQGG DSDTEEEEEN SEYEDGSETE QPAGDGAGAN ARSRYLRDNA SDSDDSDGQH RVVKSARDKR FDEMAATIDQ MRNAMKINDW VSLQESFEKI
101: NKQLEKVIRV TESEKVPNLY IKALVMLEDF LAQALANKDA KDAKKKMSST NAKALNSMKQ KLKKNNKQYE ELIAKYREKP ESEDEAAEDK DDEEDDESGS
201: EQAEGGGTWE KQMSRKDKLM DKQFMKDPSK ITWDIVDKKL KEIVAARGKK GTGRVEQVEQ LTFLTRVAKT PAQKLEILFS VISAQFDVNP SLLGHMPVGV
301: WKKCVGNMLL VLDILEQYPN IVVDDTVEPE ENETQKGVDH KGTIRVWGNL VAFLERLDSE FFKSLQCIDP HTREYVERLR DEPLFFVIAQ NVQEYLERIG
401: DFKAASRVAL RRLEVIYYKP QEVYDAMRKL AEQTGTEADF VPIPELVPRR STFPESSRTL VDALVSLIYK YGDERTKARA MLCDIYHHAI SDEFPVARDL
501: LLMSHLQDGI QLMDISSQIL FNRVMAQLGL CAFRAGLIQE AHGCLFELYQ GGRVKELLAQ GMSQNRYHEK TPEQEKAERR RQMPYHMHIN LELLEATHLI
601: CAMLLEVPNM AATTYDPKRK PISKTFRRLL EVSQRQTFVG PPENVRDHAM AATRALTKGD YQKAFNVINS LDVWKLLRNR ESVLEMVKSK IKEEALRTYL
701: FAFSSCYDSL SLGQLTSMFD LSEVHVHSIA SKMMIMDELH ASWDQPTKCI VFHNVEQTRL QGLLFQMADK LVILAENNER AFEARTGGGL EGLPPRRREG
801: QDYTGSASGR WQDGSGSASQ GRQGGGYGGR VGYGGRTGGS AQATGGGYQR DRSGQGSRGA GGYYGSAGRA AARGSQLEAS AGMVNLSRGG RI

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.