Factsheet for HORVU5Hr1G098600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G029090.1
HORVU1Hr1G048620.1
HORVU1Hr1G059220.10
HORVU2Hr1G074740.2
HORVU2Hr1G074780.1
HORVU4Hr1G014100.3
HORVU4Hr1G086160.1
HORVU5Hr1G008250.6
HORVU5Hr1G072560.1
HORVU5Hr1G106440.1
HORVU6Hr1G027500.11

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	HORVU1Hr1G059220.10	AT1G50030.1	23524850
AT3G56150.1	HORVU5Hr1G072560.1	AT3G57290.1	11029466
AT3G56150.1	HORVU0Hr1G029090.1	AT3G61140.1	11029466
AT3G56150.1	HORVU1Hr1G048620.1	AT3G61140.1	11029466
AT3G56150.1	HORVU4Hr1G086160.1	AT3G61140.1	11029466
AT3G56150.1	HORVU6Hr1G027500.11	AT3G61140.1	11029466
AT3G56150.1	HORVU2Hr1G074740.2	AT4G14110.1	11029466
AT3G56150.1	HORVU2Hr1G074780.1	AT4G14110.1	11029466
AT3G56150.1	HORVU4Hr1G014100.3	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G008250.6	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G106440.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G410800.1	Wheat	cytosol	93.85	93.75
TraesCS5A01G406000.1	Wheat	cytosol	92.77	93.17
TraesCS5D01G416000.1	Wheat	cytosol	93.1	93.1
HORVU5Hr1G063770.2	Barley	nucleus	85.01	85.01
HORVU2Hr1G058390.1	Barley	cytosol	14.56	82.82
Os07t0124500-01	Rice	nucleus	80.8	80.02
KXG35906	Sorghum	cytosol	79.29	78.78
HORVU2Hr1G058370.1	Barley	cytosol	15.32	78.02
Zm00001d002169_P006	Maize	cytosol	77.89	77.63
Zm00001d002166_P004	Maize	cytosol	77.67	77.42
Zm00001d020935_P002	Maize	cytosol	65.91	74.24
Zm00001d002737_P002	Maize	vacuole	74.11	70.9
GSMUA_Achr3P04920_001	Banana	cytosol	64.94	67.49
VIT_16s0039g01140.t01	Wine grape	cytosol	5.83	65.06
VIT_08s0007g07180.t01	Wine grape	cytosol	65.26	63.95
CDY65406	Canola	cytosol	55.77	63.51
CDY16358	Canola	cytosol	56.96	63.31
CDX72169	Canola	cytosol	56.85	63.19
PGSC0003DMT400078176	Potato	cytosol	61.27	62.14
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	60.52	62.06
KRH41811	Soybean	cytosol	61.92	61.99
KRH68073	Soybean	endoplasmic reticulum	61.81	61.88
KRH60516	Soybean	endoplasmic reticulum	61.49	61.62
CDY27241	Canola	cytosol	57.39	61.36
Bra022520.1-P	Field mustard	cytosol	57.07	61.16
Bra007220.1-P	Field mustard	cytosol	59.01	61.12
PGSC0003DMT400046928	Potato	cytosol	60.52	60.85
AT3G56150.1	Thale cress	cytosol	59.01	60.78
Solyc01g102570.2.1	Tomato	cytosol, nucleus	22.87	59.55
Solyc01g102600.2.1	Tomato	cytosol	22.76	59.1
CDY06037	Canola	cytosol	46.06	58.49
Solyc01g102560.2.1	Tomato	nucleus	19.42	58.06
CDX71953	Canola	cytosol	50.05	56.59
Bra007396.1-P	Field mustard	cytosol, mitochondrion	50.05	56.17
AT3G22860.1	Thale cress	cytosol	47.14	54.29
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.67	53.97
Solyc01g102590.2.1	Tomato	nucleus	21.47	48.54

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	UniProt:A0A287SGK2	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369
GO:GO:0033290	EnsemblPlantsGene:HORVU5Hr1G098600	EnsemblPlants:HORVU5Hr1G098600.1	InterPro:IPR000717	InterPro:IPR036388	HAMAP:MF_03002
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B469BB4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:A0A287SGK2]

Coordinates

chrchr5H:-:608276698..608281528

Molecular Weight (calculated)

105317.0 Da

IEP (calculated)

5.940

GRAVY (calculated)

-0.692

Length

927 amino acids

Sequence
(BLAST)

001: MASRFWGQQG DSDSEEEVDE IESEQGSDSE KSEAGDGGRD VSKNRYLYTE DSDDSDTESH RVIRSLKDKR NDEMKATADQ MRNAMKINDW LSLQESFDKL
101: NKQLEKVVRV NESTKIPNRY ITTLVLLEDF LAEALAKKEP KMKMSSSNFK ALGAVRQKLR KNNKQYVDLI QKCRDNPESF EDDIADDKVL GDDSSDDGTD
201: VDIVDPEPGD STDDNKSNPG GSWEKKLSKK DKTMDKQFLK DPSEITWDIV DKKLKEIVAS RGKKGTGRIE RVEKLTFLTR VAKTPAQKLE VLFHVISAQF
301: DVNPSLLGHM PINVWKKCVD NMLLVLDILQ QYPNIVVDTS VEPDDKETQK GADYDGTIHV TGDLVAFLER IDSEFFKSLQ CSDPYTKDYV QRLRDEPLFL
401: VVAQNVQDYQ ERVQNFKAAA KVALRRVELV YYKPQEVYDA MRKLAEQTEL SMDDGDTEAG EEHQKADDNR GPPPFVVIPE VVPRKPTFPP SNRELMDDLM
501: SLIYKYGDER TKARGMLCQI YHYAISDEFS VARDLTLMSH LQDGVQLMDI SSQILYNRVM AQLGLCAFRA GFIAEAHGCL SELYSFGRVK ELLAQGVQQS
601: RYNDKTPEQE RLERRRMMPY HMHINLELLE AIHLVCAMLI EVPNMAASSF DRRRPMSRTF RRLLEISERQ TFVGPPETVR DNVLAATRAL SNGDYKKAFS
701: VISSLDTWKL LRNKEHILEM LKLKIKEEAL RTYLFSYSSC YEFLSLDQLT TMFDLSEKHA HSIVSKMMMH EELHASWDQP TNCIIFQNVD QTRLQGLLFQ
801: MADRLSVLVE SNERAYEART GGALEGAPPR RRGGDGQDSY GLGKWQENFI SSQGRRGRGR SGYAGRTGGS GRGGGYQNDR FQNDRSGQGP RRGYGGGGSR
901: FHDGRARTQS GMSSRGDGGA RMVSLSR

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.