Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102560.2.1 | Tomato | nucleus | 32.65 | 97.1 |
| PGSC0003DMT400078176 | Potato | cytosol | 79.39 | 80.09 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 7.16 | 79.52 |
| Solyc01g102590.2.1 | Tomato | nucleus | 35.14 | 79.02 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 73.75 | 71.88 |
| CDY65406 | Canola | cytosol | 63.34 | 71.74 |
| KRH41811 | Soybean | cytosol | 71.58 | 71.27 |
| CDX72169 | Canola | cytosol | 64.43 | 71.22 |
| KRH68073 | Soybean | endoplasmic reticulum | 71.48 | 71.17 |
| KRH60516 | Soybean | endoplasmic reticulum | 71.37 | 71.14 |
| CDY16358 | Canola | cytosol | 64.32 | 71.1 |
| CDY27241 | Canola | cytosol | 65.18 | 69.32 |
| Bra022520.1-P | Field mustard | cytosol | 64.86 | 69.13 |
| AT3G56150.1 | Thale cress | cytosol | 66.92 | 68.56 |
| Bra007220.1-P | Field mustard | cytosol | 66.27 | 68.27 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 65.08 | 67.26 |
| CDY06037 | Canola | cytosol | 51.63 | 65.21 |
| Zm00001d002166_P004 | Maize | cytosol | 64.97 | 64.41 |
| Zm00001d002169_P006 | Maize | cytosol | 64.86 | 64.3 |
| Os07t0124500-01 | Rice | nucleus | 65.18 | 64.21 |
| KXG35906 | Sorghum | cytosol | 64.97 | 64.2 |
| HORVU2Hr1G058390.1 | Barley | cytosol | 11.17 | 63.19 |
| Zm00001d020935_P002 | Maize | cytosol | 56.29 | 63.06 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 63.34 | 63.0 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 63.23 | 62.82 |
| TraesCS5D01G228100.1 | Wheat | golgi, unclear | 63.23 | 62.82 |
| TraesCS5B01G219100.1 | Wheat | nucleus | 63.12 | 62.72 |
| TraesCS5B01G410800.1 | Wheat | cytosol | 62.15 | 61.75 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 55.31 | 61.74 |
| TraesCS5A01G406000.1 | Wheat | cytosol | 61.71 | 61.65 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 61.5 | 61.16 |
| CDX71953 | Canola | cytosol | 54.01 | 60.73 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 60.85 | 60.52 |
| AT3G22860.1 | Thale cress | cytosol | 52.17 | 59.75 |
| HORVU2Hr1G058370.1 | Barley | cytosol | 11.71 | 59.34 |
| Zm00001d002737_P002 | Maize | vacuole | 62.26 | 59.24 |
| EES13928 | Sorghum | cytosol | 53.04 | 54.64 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 3.58 | 52.38 |
Protein Annotations
| EntrezGene:102595694 | MapMan:17.4.1.3.3 | ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom | GO:GO:0001731 |
| GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 |
| GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000717 | UniProt:M1BJV6 | HAMAP:MF_03002 | InterPro:PCI_dom |
| PFAM:PF01399 | PFAM:PF05470 | EnsemblPlantsGene:PGSC0003DMG402018223 | PGSC:PGSC0003DMG402018223 | EnsemblPlants:PGSC0003DMT400046928 | PFscan:PS50250 |
| PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0002957DBA | InterPro:WH_DNA-bd_sf |
| RefSeq:XP_006358488.1 | SEG:seg | : | : | : | : |
Description
Translation-initiation factor 3 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402018223]
Coordinates
chr1:-:79279908..79285734
Molecular Weight (calculated)
104406.0 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.688
Length
922 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRFWTQGD SDTEEEEESD YELEDDAPAE NPDAPSGPGS RYLAADDSDS DESDGQKRVV RSAKDKRFEE LSATVDQMKN AMKINDWVSL QESFDKINKQ
101: LEKVMRITES IKPPNLYIKA LVMLEDFLNQ ALANKETRKK MSSSNAKALN SMKQKLKKNN KQYEELINKY RENPPVSEEE GGDDEESEEE EEEDGEDFEE
201: DPTKIAAASD EDNDDDSDDP DRTDNRWERM LNKKDKLLDK QFKDPSQITW ETVNKKFKEI VAARGRKGTG KMELVEQLTF LTKVAKTPAQ KLEILFGVVS
301: AQFDINPGLS GHMPINVWKK CLQNMFTILD VLTQYPNIVV DDMVEPDENE TQKGADHSGT IRIWGNLVAF VERIDVEFFK SLQVIDPHTS QYVERLRDEP
401: LFLVLAQNVQ RYLEQMGDYK GAAKVALKQV EFIYYKPQGV YDAMRKLAEL TEGGEAESVE ENKVVEESRG PTAFIATPEL VPRKPAFEEN SRTLMDSLVS
501: LIYKYGDERT KARAMLCDIY HHAILDEFST SRDLLLMSHL QENIQHMDIS TQILFNRAMA QLGLCAFRMA LVAEAHGCLA ELYSAGRVKE LLAQGVSQSR
601: YHEKTPEQER MERRRQMPYH MHINLELLEA VHLTCAMLLE VPNMAANSHD MKRRVISKTF RRLLEISERQ TFTGPPENVR DHVMAATRSL RQGDFQKAFD
701: VINSLDVWRL LRNKDSVLEM LRGKIKEEAL RTYLFTYSAS YNSLSLDQVA GMFDLSDSQI HSIVSKMMIS EELHASWDQP SRCMVFHDVE HTRLQALAFQ
801: LTEKLSVLAE SNERATESRI GGGALEGLPP RRRDGQDYAA AAAGGGRWQD FSFSQGRQGG SGGRTGYVGG RSTSGQTSRD RTNQARGTLG GQGSRYQSGT
901: TSRGGQMDGS GRMVNLNRGG RS
101: LEKVMRITES IKPPNLYIKA LVMLEDFLNQ ALANKETRKK MSSSNAKALN SMKQKLKKNN KQYEELINKY RENPPVSEEE GGDDEESEEE EEEDGEDFEE
201: DPTKIAAASD EDNDDDSDDP DRTDNRWERM LNKKDKLLDK QFKDPSQITW ETVNKKFKEI VAARGRKGTG KMELVEQLTF LTKVAKTPAQ KLEILFGVVS
301: AQFDINPGLS GHMPINVWKK CLQNMFTILD VLTQYPNIVV DDMVEPDENE TQKGADHSGT IRIWGNLVAF VERIDVEFFK SLQVIDPHTS QYVERLRDEP
401: LFLVLAQNVQ RYLEQMGDYK GAAKVALKQV EFIYYKPQGV YDAMRKLAEL TEGGEAESVE ENKVVEESRG PTAFIATPEL VPRKPAFEEN SRTLMDSLVS
501: LIYKYGDERT KARAMLCDIY HHAILDEFST SRDLLLMSHL QENIQHMDIS TQILFNRAMA QLGLCAFRMA LVAEAHGCLA ELYSAGRVKE LLAQGVSQSR
601: YHEKTPEQER MERRRQMPYH MHINLELLEA VHLTCAMLLE VPNMAANSHD MKRRVISKTF RRLLEISERQ TFTGPPENVR DHVMAATRSL RQGDFQKAFD
701: VINSLDVWRL LRNKDSVLEM LRGKIKEEAL RTYLFTYSAS YNSLSLDQVA GMFDLSDSQI HSIVSKMMIS EELHASWDQP SRCMVFHDVE HTRLQALAFQ
801: LTEKLSVLAE SNERATESRI GGGALEGLPP RRRDGQDYAA AAAGGGRWQD FSFSQGRQGG SGGRTGYVGG RSTSGQTSRD RTNQARGTLG GQGSRYQSGT
901: TSRGGQMDGS GRMVNLNRGG RS
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.