Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400046928 | |
PGSC0003DMT400078176 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G25780.1 | PGSC0003DMT400046928 | AT3G56150.1 | 11029466 |
AT5G25780.1 | PGSC0003DMT400078176 | AT3G56150.1 | 11029466 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g088370.2.1 | Tomato | nucleus, plastid | 97.07 | 97.07 |
VIT_04s0008g07070.t01 | Wine grape | cytosol | 85.36 | 85.24 |
KRH48727 | Soybean | endoplasmic reticulum | 81.31 | 81.2 |
KRH64883 | Soybean | endoplasmic reticulum | 81.31 | 81.2 |
GSMUA_Achr11P... | Banana | cytosol | 76.85 | 79.39 |
KRH61614 | Soybean | endoplasmic reticulum | 64.44 | 77.65 |
Os10t0569200-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 76.43 | 76.22 |
EER91898 | Sorghum | cytosol | 76.29 | 75.97 |
CDY34755 | Canola | cytosol | 75.31 | 75.63 |
Bra007832.1-P | Field mustard | cytosol | 75.31 | 75.63 |
HORVU5Hr1G106440.1 | Barley | cytosol | 75.87 | 75.45 |
CDX76792 | Canola | cytosol | 75.03 | 75.35 |
Zm00001d030011_P001 | Maize | plasma membrane | 75.59 | 75.28 |
TraesCS5A01G442500.1 | Wheat | cytosol, golgi | 75.03 | 75.24 |
CDY45599 | Canola | cytosol | 74.76 | 75.07 |
Bra032059.1-P | Field mustard | cytosol | 74.76 | 75.07 |
HORVU4Hr1G014100.3 | Barley | cytosol | 75.31 | 74.9 |
TraesCS5D01G449900.2 | Wheat | cytosol, nucleus, unclear | 75.31 | 74.9 |
TraesCS5B01G446600.1 | Wheat | cytosol | 75.17 | 74.76 |
CDY36167 | Canola | cytosol | 74.34 | 74.65 |
AT5G25780.1 | Thale cress | cytosol | 74.06 | 74.37 |
TraesCS4D01G081300.1 | Wheat | cytosol, nucleus | 74.76 | 74.34 |
TraesCS4A01G232600.1 | Wheat | cytosol | 74.2 | 73.79 |
TraesCS4B01G083200.1 | Wheat | cytosol | 72.38 | 73.62 |
AT5G27640.2 | Thale cress | cytosol | 75.73 | 73.58 |
TraesCS6B01G307400.1 | Wheat | cytosol | 69.87 | 72.82 |
TraesCS6D01G406100.1 | Wheat | cytosol | 35.01 | 54.68 |
AT1G49015.1 | Thale cress | cytosol | 15.9 | 50.22 |
CDY66663 | Canola | mitochondrion | 9.62 | 38.98 |
CDX94125 | Canola | endoplasmic reticulum, golgi | 18.13 | 37.57 |
CDX80412 | Canola | cytosol | 26.36 | 37.43 |
CDX88073 | Canola | cytosol | 26.36 | 37.28 |
Bra009732.1-P | Field mustard | cytosol | 26.36 | 37.28 |
HORVU5Hr1G008250.6 | Barley | cytosol, mitochondrion, plastid | 44.35 | 35.81 |
KRH66844 | Soybean | cytosol | 1.67 | 15.38 |
Protein Annotations
EntrezGene:102606334 | MapMan:17.4.1.3.2 | Gene3D:2.130.10.10 | Gene3D:3.30.70.330 | ncoils:Coil | InterPro:EIF3B |
GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR015943 |
UniProt:M0ZN23 | HAMAP:MF_03001 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF08662 | EnsemblPlantsGene:PGSC0003DMG400001674 |
PGSC:PGSC0003DMG400001674 | EnsemblPlants:PGSC0003DMT400004200 | PIRSF:PIRSF036424 | PFscan:PS50102 | PANTHER:PTHR14068 | InterPro:RBD_domain_sf |
InterPro:RRM_dom | SUPFAM:SSF54928 | SUPFAM:SSF82171 | InterPro:TIF_beta_prop-like | UniParc:UPI000296E2C3 | InterPro:WD40/YVTN_repeat-like_dom_sf |
RefSeq:XP_006354613.1 | InterPro:eIF3B_RRM | SEG:seg | : | : | : |
Description
Eukaryotic translation initiation factor 3 subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400001674]
Coordinates
chr1:+:68067005..68072473
Molecular Weight (calculated)
82872.0 Da
IEP (calculated)
4.777
GRAVY (calculated)
-0.600
Length
717 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVVSMEEI RAISDRLGVD LTQIDLDSIH LPPGDDLGIP SDDEDLLEED ALEEDQGFGN ILVVDNLPVV PKEKYEKLEG VVRKIYSQLG VIKEGGLYMP
101: IDPETQKTLG YCFIEYNTPQ EAELSKEKTH GYKLDRSHIF AVNMFEDIEK FLKVPDEWAP PEIKPYVPGE MLLKWLTDEK ARDQYVIRSG GDTEVLWNDA
201: RQMKPELVYK RPYWTESFVQ WSPMGTYLAT VHRQGAAIWG GATTFNRLMR YAHPQVKLID FSPGERYLVT YSSHEPSNPR DTHRVVLNIF DVRTGKVMRD
301: FKGSADEFAV GGTGGVTGVS WPVFRWSGGK EDKYFARIGK NVISVYETET FSLIDKKSIK VENVMDFSWS PTDPILSLFV PECGNQPARV SLVQIPSKEE
401: LRQKNLFSVS DCKMYWQSNG DYLAVKVDRY TKTKKSTYTG FELFRIKERD IPIEVLELDN KNDKIIAFAW EPKGHRFAVI HGDNPRPDVS FYSMRSGTNT
501: GRVSKLTTLK GKQANALYWS PGGRFIILAG MKGFNGQLEF FDVDELDTMA SAEHFMATDV EWDPTGRYVA TAVTSVHEME NGFNIWSFNG KLLYRILKDH
601: FFQFLWRPRP PSFLSKEKEE EIAKNLKKYS KKYEAEDQDV SLLLSEQDRE KRKKLKEEWE AWINEWKQLH EEEKMERERL RDGEASDEEE EYQAKEVEVE
701: EILKVEEEVI PFEESQQ
101: IDPETQKTLG YCFIEYNTPQ EAELSKEKTH GYKLDRSHIF AVNMFEDIEK FLKVPDEWAP PEIKPYVPGE MLLKWLTDEK ARDQYVIRSG GDTEVLWNDA
201: RQMKPELVYK RPYWTESFVQ WSPMGTYLAT VHRQGAAIWG GATTFNRLMR YAHPQVKLID FSPGERYLVT YSSHEPSNPR DTHRVVLNIF DVRTGKVMRD
301: FKGSADEFAV GGTGGVTGVS WPVFRWSGGK EDKYFARIGK NVISVYETET FSLIDKKSIK VENVMDFSWS PTDPILSLFV PECGNQPARV SLVQIPSKEE
401: LRQKNLFSVS DCKMYWQSNG DYLAVKVDRY TKTKKSTYTG FELFRIKERD IPIEVLELDN KNDKIIAFAW EPKGHRFAVI HGDNPRPDVS FYSMRSGTNT
501: GRVSKLTTLK GKQANALYWS PGGRFIILAG MKGFNGQLEF FDVDELDTMA SAEHFMATDV EWDPTGRYVA TAVTSVHEME NGFNIWSFNG KLLYRILKDH
601: FFQFLWRPRP PSFLSKEKEE EIAKNLKKYS KKYEAEDQDV SLLLSEQDRE KRKKLKEEWE AWINEWKQLH EEEKMERERL RDGEASDEEE EYQAKEVEVE
701: EILKVEEEVI PFEESQQ
001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES
Arabidopsis Description
TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.