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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 3
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g088370.2.1 Tomato nucleus, plastid 97.07 97.07
VIT_04s0008g07070.t01 Wine grape cytosol 85.36 85.24
KRH48727 Soybean endoplasmic reticulum 81.31 81.2
KRH64883 Soybean endoplasmic reticulum 81.31 81.2
GSMUA_Achr11P... Banana cytosol 76.85 79.39
KRH61614 Soybean endoplasmic reticulum 64.44 77.65
Os10t0569200-01 Rice cytosol, golgi, nucleus, plasma membrane, plastid 76.43 76.22
EER91898 Sorghum cytosol 76.29 75.97
CDY34755 Canola cytosol 75.31 75.63
Bra007832.1-P Field mustard cytosol 75.31 75.63
HORVU5Hr1G106440.1 Barley cytosol 75.87 75.45
CDX76792 Canola cytosol 75.03 75.35
Zm00001d030011_P001 Maize plasma membrane 75.59 75.28
TraesCS5A01G442500.1 Wheat cytosol, golgi 75.03 75.24
CDY45599 Canola cytosol 74.76 75.07
Bra032059.1-P Field mustard cytosol 74.76 75.07
HORVU4Hr1G014100.3 Barley cytosol 75.31 74.9
TraesCS5D01G449900.2 Wheat cytosol, nucleus, unclear 75.31 74.9
TraesCS5B01G446600.1 Wheat cytosol 75.17 74.76
CDY36167 Canola cytosol 74.34 74.65
AT5G25780.1 Thale cress cytosol 74.06 74.37
TraesCS4D01G081300.1 Wheat cytosol, nucleus 74.76 74.34
TraesCS4A01G232600.1 Wheat cytosol 74.2 73.79
TraesCS4B01G083200.1 Wheat cytosol 72.38 73.62
AT5G27640.2 Thale cress cytosol 75.73 73.58
TraesCS6B01G307400.1 Wheat cytosol 69.87 72.82
TraesCS6D01G406100.1 Wheat cytosol 35.01 54.68
AT1G49015.1 Thale cress cytosol 15.9 50.22
CDY66663 Canola mitochondrion 9.62 38.98
CDX94125 Canola endoplasmic reticulum, golgi 18.13 37.57
CDX80412 Canola cytosol 26.36 37.43
CDX88073 Canola cytosol 26.36 37.28
Bra009732.1-P Field mustard cytosol 26.36 37.28
HORVU5Hr1G008250.6 Barley cytosol, mitochondrion, plastid 44.35 35.81
KRH66844 Soybean cytosol 1.67 15.38
Protein Annotations
EntrezGene:102606334MapMan:17.4.1.3.2Gene3D:2.130.10.10Gene3D:3.30.70.330ncoils:CoilInterPro:EIF3B
GO:GO:0001731GO:GO:0001732GO:GO:0002183GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003743GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005852GO:GO:0006412GO:GO:0006413GO:GO:0006446GO:GO:0008135
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016282
GO:GO:0019538GO:GO:0031369GO:GO:0033290InterPro:IPR000504InterPro:IPR012677InterPro:IPR015943
UniProt:M0ZN23HAMAP:MF_03001InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFAM:PF08662EnsemblPlantsGene:PGSC0003DMG400001674
PGSC:PGSC0003DMG400001674EnsemblPlants:PGSC0003DMT400004200PIRSF:PIRSF036424PFscan:PS50102PANTHER:PTHR14068InterPro:RBD_domain_sf
InterPro:RRM_domSUPFAM:SSF54928SUPFAM:SSF82171InterPro:TIF_beta_prop-likeUniParc:UPI000296E2C3InterPro:WD40/YVTN_repeat-like_dom_sf
RefSeq:XP_006354613.1InterPro:eIF3B_RRMSEG:seg:::
Description
Eukaryotic translation initiation factor 3 subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400001674]
Coordinates
chr1:+:68067005..68072473
Molecular Weight (calculated)
82872.0 Da
IEP (calculated)
4.777
GRAVY (calculated)
-0.600
Length
717 amino acids
Sequence
(BLAST)
001: MSEVVSMEEI RAISDRLGVD LTQIDLDSIH LPPGDDLGIP SDDEDLLEED ALEEDQGFGN ILVVDNLPVV PKEKYEKLEG VVRKIYSQLG VIKEGGLYMP
101: IDPETQKTLG YCFIEYNTPQ EAELSKEKTH GYKLDRSHIF AVNMFEDIEK FLKVPDEWAP PEIKPYVPGE MLLKWLTDEK ARDQYVIRSG GDTEVLWNDA
201: RQMKPELVYK RPYWTESFVQ WSPMGTYLAT VHRQGAAIWG GATTFNRLMR YAHPQVKLID FSPGERYLVT YSSHEPSNPR DTHRVVLNIF DVRTGKVMRD
301: FKGSADEFAV GGTGGVTGVS WPVFRWSGGK EDKYFARIGK NVISVYETET FSLIDKKSIK VENVMDFSWS PTDPILSLFV PECGNQPARV SLVQIPSKEE
401: LRQKNLFSVS DCKMYWQSNG DYLAVKVDRY TKTKKSTYTG FELFRIKERD IPIEVLELDN KNDKIIAFAW EPKGHRFAVI HGDNPRPDVS FYSMRSGTNT
501: GRVSKLTTLK GKQANALYWS PGGRFIILAG MKGFNGQLEF FDVDELDTMA SAEHFMATDV EWDPTGRYVA TAVTSVHEME NGFNIWSFNG KLLYRILKDH
601: FFQFLWRPRP PSFLSKEKEE EIAKNLKKYS KKYEAEDQDV SLLLSEQDRE KRKKLKEEWE AWINEWKQLH EEEKMERERL RDGEASDEEE EYQAKEVEVE
701: EILKVEEEVI PFEESQQ
Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)
001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES
Arabidopsis Description
TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.