CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009732.1-P	Field mustard	cytosol	97.44	97.44
CDX80412	Canola	cytosol	87.57	87.92
CDX94125	Canola	endoplasmic reticulum, golgi	43.39	63.58
CDY34755	Canola	cytosol	39.45	28.01
CDX76792	Canola	cytosol	39.25	27.87
CDY36167	Canola	cytosol	38.86	27.59
CDY45599	Canola	cytosol	38.66	27.45
GSMUA_Achr11P...	Banana	cytosol	37.48	27.38
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	37.87	26.7
Zm00001d030011_P001	Maize	plasma membrane	37.48	26.39
PGSC0003DMT400004200	Potato	cytosol	37.28	26.36
EER91898	Sorghum	cytosol	37.28	26.25
Solyc01g088370.2.1	Tomato	nucleus, plastid	37.08	26.22
TraesCS5A01G442500.1	Wheat	cytosol, golgi	36.69	26.01
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	36.69	25.8
TraesCS5B01G446600.1	Wheat	cytosol	36.69	25.8
HORVU5Hr1G106440.1	Barley	cytosol	36.49	25.66
TraesCS4B01G083200.1	Wheat	cytosol	35.5	25.53
TraesCS4A01G232600.1	Wheat	cytosol	36.29	25.52
HORVU4Hr1G014100.3	Barley	cytosol	36.09	25.38
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	35.7	25.1
TraesCS6B01G307400.1	Wheat	cytosol	33.33	24.56
TraesCS6D01G406100.1	Wheat	cytosol	18.54	20.48
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	34.91	19.93
CDY66663	Canola	mitochondrion	5.52	15.82
CDX68240	Canola	nucleus	15.98	15.79
CDY11124	Canola	mitochondrion	15.98	14.29
CDY66322	Canola	golgi, plastid	4.73	11.59

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078DLH6	EnsemblPlants:CDX88073	ProteinID:CDX88073	ProteinID:CDX88073.1
InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	EnsemblPlantsGene:GSBRNA2T00147495001	InterPro:IPR015943	PFAM:PF08662
PANTHER:PTHR14068	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0004EF0AF5	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

BnaA06g26640D

Coordinates

chrLK031854:-:440613..443595

Molecular Weight (calculated)

57480.0 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.333

Length

507 amino acids

Sequence
(BLAST)

001: MADAEVERRM RGDTCTITTR RRTYRRIESK AGSSRSPEES YLQFIKIETK NPPTSIPCSS SLTRRFFDRP LDSKCFNVGV GALDQLFIRD GTLDKLIWND
101: NWSVDETVSF FRYPSDKKLP SRWSPLGSFF VSSNYNLVII WGSRYYTDFG RLMRFSHYQV EEFDISPGEK YLVTYNRPDP TDPNGLWLKI FDVSTGTGIV
201: GLNNADVADS PQWPVIRWAG GKDDTYFATL SKSNTVSVYE TKTFNLLGKA PLKLDDVIDI SWSPTEAVLA ILCGEKPLKV LLLQIPDEVK LAEKEITAIV
301: GDCKMHWQSN GEYLAVNTYG GFEFFRIKEE GIPTDFLKVD KKILAFAWEP SGHRFAVIYG DEPTLTVSFY SMKTPGKVTE LTTLSNKQAD SLFWSPKGNL
401: VVLAGLKEGK LEFFDVDRLA QISSVANVKA NQVVWNPSGE YVATVSTIPQ EEFDSDWCSD PNDPLDRFTI WSSGGDCLFV HQCQNRIMQL DWRPYGGIID
501: DDMLKTQ

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.