Factsheet for TraesCS4D01G081300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G232600.1	Wheat	cytosol	97.92	97.92
TraesCS4B01G083200.1	Wheat	cytosol	95.28	97.45
HORVU4Hr1G014100.3	Barley	cytosol	95.42	95.42
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	93.48	93.48
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	84.05	84.28
EER91898	Sorghum	cytosol	83.77	83.89
Zm00001d030011_P001	Maize	plasma membrane	82.52	82.64
GSMUA_Achr11P...	Banana	cytosol	75.17	78.1
VIT_04s0008g07070.t01	Wine grape	cytosol	76.28	76.6
PGSC0003DMT400004200	Potato	cytosol	74.34	74.76
Solyc01g088370.2.1	Tomato	nucleus, plastid	73.79	74.2
KRH48727	Soybean	endoplasmic reticulum	73.65	73.96
KRH64883	Soybean	endoplasmic reticulum	73.37	73.68
VIT_04s0008g07060.t01	Wine grape	mitochondrion	9.85	71.0
CDY34755	Canola	cytosol	69.49	70.17
Bra007832.1-P	Field mustard	cytosol	69.35	70.03
CDX76792	Canola	cytosol	69.21	69.89
Bra032059.1-P	Field mustard	cytosol	68.93	69.61
CDY45599	Canola	cytosol	68.93	69.61
KRH61614	Soybean	endoplasmic reticulum	57.42	69.58
CDY36167	Canola	cytosol	68.79	69.47
AT5G25780.1	Thale cress	cytosol	68.52	69.19
AT5G27640.2	Thale cress	cytosol	69.76	68.16
TraesCS6D01G406100.1	Wheat	cytosol	39.81	62.53
AT1G49015.1	Thale cress	cytosol	15.81	50.22
Bra009732.1-P	Field mustard	cytosol	25.1	35.7
CDX88073	Canola	cytosol	25.1	35.7
CDY66663	Canola	mitochondrion	8.74	35.59
CDX80412	Canola	cytosol	24.83	35.45
CDX94125	Canola	endoplasmic reticulum, golgi	16.78	34.97
KRH66844	Soybean	cytosol	1.66	15.38
TraesCS6D01G199300.3	Wheat	plastid	11.93	14.14

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	ncoils:Coil	InterPro:EIF3B	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0031369	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS4D01G081300
EnsemblPlants:TraesCS4D01G081300.1	InterPro:WD40/YVTN_repeat-like_dom_sf	TIGR:cd12278	InterPro:eIF3B_RRM	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:55064340..55068385

Molecular Weight (calculated)

83336.6 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.551

Length

721 amino acids

Sequence
(BLAST)

001: MALAISMEAI DARARELGID LDSVDVDSIT LPPGEDFGIL SDDEDLLQNE DIPELEMGFA NIIVVDNLPV VPPEKYEKLE NVLRKIYGQL GVIREGGLWM
101: PTDPETKKTQ GYCFIEFNTP QEAEFAMEKT RGYKLDKSHI FAVNMFDDFE KYMKVPDEWA PAEIKPYTPG ENLLKWLTDD KARDQFVIRA GTFTEVYWND
201: ARRAMPELVY QKQYWTDSYI QWSPLGTHLA TVHRQGAQVW GGDDKFVRLM RFLHPQLKLI DFSPGEKYLI TYSSHEPSNP IDTHRVVLNI FDVRTGKVMR
301: EFKGSADDFT TGGNMGVSGV SWPIFRWGGG RDDKYFARLG KNVISVYDTE TFALIDKKSL KVENVVDFSW SPTDPIISLF VPELGGGNQP ARMSLVQIPG
401: KEEIRQKNLF SVSDCKMYWQ NNGEYLAVQV DRYTKTKKSI YTGFELFRIK ERDIPIEVFE LDNKNDKIIA FAWEPKGHRF AVIHGDGPKP DISFYTMKAV
501: NNNVSRVSKL TTLKGKQANA LFWSPAGRFI VLAGMRGFNG QLEFFNVDEL ETMATGEHFM ATDIMWDPTG RYLATAVTSV HEMENGFQIW SFNGKQIYKV
601: LKDQFYQFQW RPRPPSLLTP EKEEDISKNL KRYSKKYEQE DQDVHHLLDE EERKRRTRLQ EVWEAWVAKW KQLHEDEGAF RMQLRGGEDS DKEEEAEYKE
701: IEAEELVDVT EETVAFDLDQ E

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.