Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 7
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0039g01140.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G25780.1 | VIT_16s0039g01140.t01 | AT3G56150.1 | 11029466 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66663 | Canola | mitochondrion | 38.0 | 21.47 |
| AT1G49015.1 | Thale cress | cytosol | 36.0 | 15.86 |
| VIT_04s0008g07070.t01 | Wine grape | cytosol | 84.0 | 11.7 |
| GSMUA_Achr11P... | Banana | cytosol | 77.0 | 11.1 |
| AT5G25780.1 | Thale cress | cytosol | 76.0 | 10.64 |
| TraesCS6D01G406100.1 | Wheat | cytosol | 48.0 | 10.46 |
| AT5G27640.2 | Thale cress | cytosol | 76.0 | 10.3 |
| Os10t0569200-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 73.0 | 10.15 |
| EER91898 | Sorghum | cytosol | 73.0 | 10.14 |
| HORVU5Hr1G106440.1 | Barley | cytosol | 73.0 | 10.12 |
| TraesCS5A01G442500.1 | Wheat | cytosol, golgi | 72.0 | 10.07 |
| TraesCS6B01G307400.1 | Wheat | cytosol | 69.0 | 10.03 |
| Zm00001d030011_P001 | Maize | plasma membrane | 72.0 | 10.0 |
| TraesCS5B01G446600.1 | Wheat | cytosol | 72.0 | 9.99 |
| TraesCS5D01G449900.2 | Wheat | cytosol, nucleus, unclear | 72.0 | 9.99 |
| HORVU4Hr1G014100.3 | Barley | cytosol | 72.0 | 9.99 |
| Bra007832.1-P | Field mustard | cytosol | 71.0 | 9.94 |
| TraesCS4B01G083200.1 | Wheat | cytosol | 70.0 | 9.93 |
| TraesCS4D01G081300.1 | Wheat | cytosol, nucleus | 71.0 | 9.85 |
| Bra032059.1-P | Field mustard | cytosol | 70.0 | 9.8 |
| TraesCS4A01G232600.1 | Wheat | cytosol | 70.0 | 9.71 |
| Bra009732.1-P | Field mustard | cytosol | 40.0 | 7.89 |
| HORVU5Hr1G008250.6 | Barley | cytosol, mitochondrion, plastid | 58.0 | 6.53 |
| VIT_05s0094g00460.t01 | Wine grape | nucleus | 21.0 | 3.64 |
| KRH66844 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | ProteinID:CCB46890 | ProteinID:CCB46890.1 | InterPro:EIF3B | UniProt:F6H3K4 | EMBL:FN595231 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0031369 | PFAM:PF08662 | PANTHER:PTHR14068 | SUPFAM:SSF101908 | InterPro:TIF_beta_prop-like |
| UniParc:UPI0002109D68 | ArrayExpress:VIT_04s0008g07060 | EnsemblPlantsGene:VIT_04s0008g07060 | EnsemblPlants:VIT_04s0008g07060.t01 | : | : |
Description
No Description!
Coordinates
chr4:-:7177296..7177598
Molecular Weight (calculated)
10877.0 Da
IEP (calculated)
9.605
GRAVY (calculated)
-0.270
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MTAWKPKGQR FAVVHGGSLG PDVSFYSMRS GGNAGQVSKP TALKGKQANA LFWSPAGRYI ILAGLKGFNG RLEFYNVDEL ETMATAEHFM ATHIEWDPTG
001: MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM
Arabidopsis Description
EIF3B-2Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:Q8GUM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.