CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13928
KXG35906

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	EES13928	AT3G56150.1	11029466
AT5G25780.1	KXG35906	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030011_P001	Maize	plasma membrane	96.67	96.67
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	88.06	88.18
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	86.67	86.55
HORVU5Hr1G106440.1	Barley	cytosol	86.53	86.41
TraesCS5A01G442500.1	Wheat	cytosol, golgi	85.69	86.29
TraesCS5B01G446600.1	Wheat	cytosol	86.39	86.27
HORVU4Hr1G014100.3	Barley	cytosol	84.58	84.47
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	83.89	83.77
TraesCS4A01G232600.1	Wheat	cytosol	83.33	83.22
TraesCS4B01G083200.1	Wheat	cytosol	81.11	82.84
TraesCS6B01G307400.1	Wheat	cytosol	78.47	82.12
GSMUA_Achr11P...	Banana	cytosol	78.47	81.41
VIT_04s0008g07070.t01	Wine grape	cytosol	80.0	80.22
KRH48727	Soybean	endoplasmic reticulum	76.94	77.16
KRH64883	Soybean	endoplasmic reticulum	76.81	77.02
PGSC0003DMT400004200	Potato	cytosol	75.97	76.29
Solyc01g088370.2.1	Tomato	nucleus, plastid	75.28	75.59
KRH61614	Soybean	endoplasmic reticulum	60.42	73.11
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.14	73.0
CDY34755	Canola	cytosol	70.97	71.57
Bra007832.1-P	Field mustard	cytosol	70.97	71.57
CDX76792	Canola	cytosol	70.69	71.29
CDY36167	Canola	cytosol	70.42	71.01
Bra032059.1-P	Field mustard	cytosol	70.28	70.87
CDY45599	Canola	cytosol	70.28	70.87
AT5G25780.1	Thale cress	cytosol	69.44	70.03
AT5G27640.2	Thale cress	cytosol	71.11	69.38
TraesCS6D01G406100.1	Wheat	cytosol	40.0	62.75
AT1G49015.1	Thale cress	cytosol	16.53	52.42
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	48.19	39.08
CDX88073	Canola	cytosol	26.25	37.28
Bra009732.1-P	Field mustard	cytosol	26.25	37.28
CDX80412	Canola	cytosol	26.11	37.23
CDX94125	Canola	endoplasmic reticulum, golgi	17.64	36.71
CDY66663	Canola	mitochondrion	8.75	35.59
EES05393	Sorghum	nucleus	12.64	17.4
KRH66844	Soybean	cytosol	1.67	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EntrezGene:8055159	UniProt:C5WRE1	ncoils:Coil
EnsemblPlants:EER91898	ProteinID:EER91898	ProteinID:EER91898.1	InterPro:EIF3B	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369
GO:GO:0033290	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G291800	SUPFAM:SSF54928	SUPFAM:SSF82171	unigene:Sbi.5207
InterPro:TIF_beta_prop-like	UniParc:UPI0001A8242F	InterPro:WD40/YVTN_repeat-like_dom_sf	RefSeq:XP_002464900.1	InterPro:eIF3B_RRM	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:56862598..56867224

Molecular Weight (calculated)

83103.1 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.576

Length

720 amino acids

Sequence
(BLAST)

001: MALAISMEGI DARARELGVD LSAVDLDSIT LPAGEDFGIL SDDEEVLRSE DPPELEMGLS NIIVVDNLPV VPPEKFEKLE NVIRKIYSQI GVIKENGLWM
101: PVNSETKKTY GYCFIEYNTP QEAELAREKT NGYKLDKSHI FAVNLLDDFE KYMKVPDTWT PAEIKPYTAG ENLLKWLTDE KARDQFVIRA GTLTEVYWND
201: ARKLAPELVF QKQYWTDSFI QWSPLGTYLA TVHRQGSQVW GGENGFERLM RFAHPMVKLI DFSPGERYLV TYSSHEPSNP RDTHRVVLNI FDVRTGKVMR
301: DFKGSADDYT TGGNIGVSGV SWPIFRWGGG KDDKYFARLG KNIISVYETN TFSLLDKKSL KVENVVDFSW SPTDPIISLF VPEMGGGNQP ARVSLVQIPG
401: KEELRQKNLF SVSDCKMYWQ NSGEYLAVQV DRYTKTKKST YTGFELFRIK ERDIPIEVLE LENKNDKIIA FAWEPKGHRF AIIHGDGPRP DVSFYTMRTA
501: NNTNRVSKLT TLKAKQANAL YWSPAGRFIV LAGLKGFNGQ LEFYNVDELE TMATGEHFMA TDIMWDPTGR YLATAVTSVH EMENGFQIWS FNGKHLYKVS
601: KDHFYQFIWR PRPPSLLSPE KEEEISRNLK KYSKKYEQED QDAFNQLSEQ DRKRRTQLQE EWDSWVAKWK QMHEEERAFR MELRDGEASD EEEEYEAKEV
701: EVEEVVDVRQ EVLAFDLDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.