CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72169
CDY16358
CDY27241
CDY65406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	CDX72169	AT3G56150.1	11029466
AT5G25780.1	CDY16358	AT3G56150.1	11029466
AT5G25780.1	CDY27241	AT3G56150.1	11029466
AT5G25780.1	CDY65406	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45599	Canola	cytosol	98.88	98.88
CDY34755	Canola	cytosol	94.68	94.68
CDX76792	Canola	cytosol	94.12	94.12
AT5G25780.1	Thale cress	cytosol	89.78	89.78
AT5G27640.2	Thale cress	cytosol	91.74	88.75
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.65	74.34
PGSC0003DMT400004200	Potato	cytosol	74.65	74.34
GSMUA_Achr11P...	Banana	cytosol	71.43	73.49
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	71.43	70.93
EER91898	Sorghum	cytosol	71.01	70.42
TraesCS5A01G442500.1	Wheat	cytosol, golgi	69.47	69.37
Zm00001d030011_P001	Maize	plasma membrane	69.89	69.31
HORVU4Hr1G014100.3	Barley	cytosol	69.89	69.21
HORVU5Hr1G106440.1	Barley	cytosol	69.75	69.07
TraesCS4B01G083200.1	Wheat	cytosol	67.93	68.79
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	69.47	68.79
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	69.47	68.79
TraesCS4A01G232600.1	Wheat	cytosol	69.33	68.65
TraesCS5B01G446600.1	Wheat	cytosol	69.33	68.65
TraesCS6B01G307400.1	Wheat	cytosol	64.99	67.44
TraesCS6D01G406100.1	Wheat	cytosol	32.63	50.76
CDY66663	Canola	mitochondrion	10.22	41.24
CDX88073	Canola	cytosol	27.59	38.86
CDX80412	Canola	cytosol	27.17	38.42
CDX94125	Canola	endoplasmic reticulum, golgi	18.49	38.15
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	43.0	34.57
CDX68240	Canola	nucleus	12.18	16.96
CDY11124	Canola	mitochondrion	12.75	16.05
CDY66322	Canola	golgi, plastid	4.34	14.98

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	GO:A0A078HEF3	UniProt:A0A078HEF3	EnsemblPlants:CDY36167
ProteinID:CDY36167	ProteinID:CDY36167.1	InterPro:EIF3B	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290
EnsemblPlantsGene:GSBRNA2T00060021001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0004EE780D
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM	SEG:seg	:	:	:

Description

BnaC04g37270DEukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A078HEF3]

Coordinates

chrLK032368:+:94235..97579

Molecular Weight (calculated)

81972.7 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.617

Length

714 amino acids

Sequence
(BLAST)

001: MANIDIDSRA AQLGIDWSQV NLDSIHLPRG EDFGIQSDDE GVYHDDQLEF DTGFGNIIVV DNLPVVPKAK FEKLENVLKK IYNQLGVIKE NGLWMPVDPG
101: TGVTLGYCFI EFNTPQEAQN AKEKTHGYKL DKSHIFAVNM FDDFDRLMNV KGEWEAPQTK PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VLWNDPRQKN
201: TEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FPRLMRYQHN MVKLVDFSPG EKYLVTYHSQ EPSNPRGASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWGGGKDDKY FAKLSKNTIS VYETETFGLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY TMKTAQHGGR
501: VTKLGTLKAK QANALFWSPT GKYIILAGLK NFNGQLEFFN VDEMETMATT EHFMATDIEW DPTGRYVATA VTSVHEMENG FTVWSFNGKL LYRVLKDHFF
601: QLAWRPRPAS FLSPEKEEEI AKNLRKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLERQNLRD GEISDEEEDD EEAKEVKEVE
701: FEDVIDVTEE IVQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.