Factsheet for TraesCS6B01G307400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G083200.1	Wheat	cytosol	94.19	91.91
HORVU4Hr1G014100.3	Barley	cytosol	94.48	90.15
TraesCS5B01G446600.1	Wheat	cytosol	92.3	88.07
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	82.99	79.42
EER91898	Sorghum	cytosol	82.12	78.47
Zm00001d030011_P001	Maize	plasma membrane	81.25	77.64
GSMUA_Achr11P...	Banana	cytosol	74.27	73.63
VIT_04s0008g07070.t01	Wine grape	cytosol	75.0	71.87
PGSC0003DMT400004200	Potato	cytosol	72.82	69.87
KRH48727	Soybean	endoplasmic reticulum	72.67	69.64
Solyc01g088370.2.1	Tomato	nucleus, plastid	72.38	69.46
KRH64883	Soybean	endoplasmic reticulum	72.38	69.36
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.03	69.0
CDY34755	Canola	cytosol	68.17	65.69
Bra007832.1-P	Field mustard	cytosol	68.02	65.55
CDX76792	Canola	cytosol	67.88	65.41
CDY45599	Canola	cytosol	67.59	65.13
Bra032059.1-P	Field mustard	cytosol	67.59	65.13
KRH61614	Soybean	endoplasmic reticulum	56.25	65.04
AT5G25780.1	Thale cress	cytosol	67.44	64.99
CDY36167	Canola	cytosol	67.44	64.99
AT5G27640.2	Thale cress	cytosol	68.75	64.09
AT1G49015.1	Thale cress	cytosol	15.41	46.7
CDY66663	Canola	mitochondrion	9.01	35.03
Bra009732.1-P	Field mustard	cytosol	24.56	33.33
CDX88073	Canola	cytosol	24.56	33.33
CDX80412	Canola	cytosol	24.13	32.87
CDX94125	Canola	endoplasmic reticulum, golgi	16.28	32.37
TraesCS6B01G246600.1	Wheat	plastid	11.92	15.74
KRH66844	Soybean	cytosol	1.74	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.120.10.30	Gene3D:2.130.10.10	Gene3D:3.30.70.330	InterPro:6-blade_b-propeller_TolB-like	ncoils:Coil
InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	InterPro:IPR000504	InterPro:IPR011042	InterPro:IPR012677
InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424
PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54928	SUPFAM:SSF82171
InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS6B01G307400	EnsemblPlants:TraesCS6B01G307400.1	InterPro:WD40/YVTN_repeat-like_dom_sf	TIGR:cd12278	InterPro:eIF3B_RRM
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:551030907..551034918

Molecular Weight (calculated)

79656.9 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.590

Length

688 amino acids

Sequence
(BLAST)

001: MEVIDARARE LGIDLDSVDV DSITLPPGED FDILSDDEDL LQNEDIPELE IGFANIIVVD NLPVVPREKY EKLENEGGLW MPTDPETKKT QGYCFIEFNT
101: PQEAEFAMEK TRGYKLDKSH IFAVNMFDDF EKYMKVPDEW APAEIKSYTP GENLLKLLTD DKARDQFVIR AGTFTEVYWN DARRAMPELV YQKQYWTDSY
201: IQWSPLGTHL ATVHRQGAQV WGGDDKFVRL MRFAHPQLKL IDFSPGEKYL ITYSSHEPSN PRDTHRVVLN IFDVRTGKVM WEFKGSADDF TTGGNMGVSG
301: VSWPIFRWGG GRDDKYFARL GKNVISVYDT ETFALIDKKS LKVENVVDFS WSPTDPIISL FVPELGGGNQ PARVSLVPIP GKEEIRQKNL FSVSDCKMYW
401: QNNGEYLALQ VDRYTKTKKN IPIEVFELDN KNDKIIAFAW EPKGRRFAVI HGDGPKPDIS FYIMKAVNNN VSRVSKLTTL KGKQSNALFW SPAGRFIVLA
501: GLMGFNGQLE FFNVDDLEPM ATGEHFMATD IMWDPTGRYL ATAVTSVHEM ENGFQIWSFN GKQIYNVSKD HFYQFQWRPR PPSLLTPEKE EDISKNLKRY
601: SKKYEHEDQD VHHLLDEEER KRRMRLQEVW EAWVAKWKQL HEEERAFRMQ LRGAEDSDKE EEAEYKEIEA EELVDVTEKT VAFDLDQE

Best Arabidopsis Sequence Match ( AT1G49015.1 )
(BLAST)

001: MAGVDGHVVD NSWPIIRWAG GKDDKYFATL IKNTTATQEG AAVNFDDVVG MSWSPTEPIL SLLKGDVKNQ PKKVVFLQIP GYVELMHKDI LSVSDCKMYW
101: QSKGKYLAVQ VTRHTCSLFE LFRFNKVQGI TTEALEVDEK ILAFAWEPSG HRFAVIHGDQ SKPNVSFYSM ETPQNPGKVS KLATFDDKEA DALFWSPRGK
201: HIVLAGLKAA SMAISSFSTW ISLRCSR

Arabidopsis Description

DPP6 N-terminal domain-like protein [Source:UniProtKB/TrEMBL;Acc:F4I057]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.