Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G219100.1 | Wheat | nucleus | 99.89 | 99.89 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 98.38 | 98.38 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 97.52 | 97.63 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 87.39 | 87.49 |
| KXG35906 | Sorghum | cytosol | 82.65 | 82.21 |
| Os07t0124500-01 | Rice | nucleus | 81.9 | 81.2 |
| Zm00001d002169_P006 | Maize | cytosol | 81.14 | 80.97 |
| Zm00001d002166_P004 | Maize | cytosol | 81.03 | 80.86 |
| Zm00001d020935_P002 | Maize | cytosol | 68.43 | 77.16 |
| Zm00001d002737_P002 | Maize | vacuole | 77.05 | 73.79 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 67.24 | 69.96 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 6.14 | 68.67 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 4.53 | 66.67 |
| CDY65406 | Canola | cytosol | 57.76 | 65.85 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 66.49 | 65.22 |
| CDY16358 | Canola | cytosol | 58.41 | 64.99 |
| CDX72169 | Canola | cytosol | 58.3 | 64.87 |
| PGSC0003DMT400078176 | Potato | cytosol | 62.93 | 63.9 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 62.18 | 63.83 |
| CDY27241 | Canola | cytosol | 59.48 | 63.67 |
| Bra022520.1-P | Field mustard | cytosol | 58.94 | 63.24 |
| PGSC0003DMT400046928 | Potato | cytosol | 62.82 | 63.23 |
| KRH41811 | Soybean | cytosol | 62.82 | 62.96 |
| KRH68073 | Soybean | endoplasmic reticulum | 62.72 | 62.85 |
| KRH60516 | Soybean | endoplasmic reticulum | 62.5 | 62.7 |
| Bra007220.1-P | Field mustard | cytosol | 60.34 | 62.57 |
| Solyc01g102600.2.1 | Tomato | cytosol | 24.03 | 62.47 |
| AT3G56150.1 | Thale cress | cytosol | 60.56 | 62.44 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 23.92 | 62.36 |
| Solyc01g102560.2.1 | Tomato | nucleus | 20.26 | 60.65 |
| CDY06037 | Canola | cytosol | 46.88 | 59.59 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 50.97 | 57.26 |
| CDX71953 | Canola | cytosol | 50.0 | 56.59 |
| AT3G22860.1 | Thale cress | cytosol | 47.74 | 55.03 |
| Solyc01g102590.2.1 | Tomato | nucleus | 22.41 | 50.73 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0031369 | InterPro:IPR000717 | InterPro:IPR036388 | HAMAP:MF_03002 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF05470 | PFscan:PS50250 | PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:TraesCS5D01G228100 | EnsemblPlants:TraesCS5D01G228100.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:335231665..335235408
Molecular Weight (calculated)
104927.0 Da
IEP (calculated)
5.370
GRAVY (calculated)
-0.710
Length
928 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRFWGQGD SDSEEEVDEI ESEQGSDSEK SEAGDGGRDG SKNRYLNKYT QDSDDSDTES HRVIRSLKDK RNDEMKATAD QMRNAMKIND WISLQECFDK
101: LNKQLDKVVR VNESAKIPNG YITTLVLLED FLAEALANKE AKKKMSSSNA KALNAVKQKL KKNNKQYEDL IQKCRENPES FEDDVADDKD VDDDDDESGD
201: DVVDPDKMAS DSEDSGNEDD VSQDGGAWEK KLSKKDKIMD KQFLKDPSEI TWDIVDKKLK EIVASRGKKG TGRVERVEQL TFLTRVAKTP AQKLEILFHV
301: ISAQFDVNPS LLGHMPVNVW KKCVNNMLLV LDILQQYPNI VVDTSVEADE KETQKGADYD GTIHVTGDLV AFLERIDSEF FKSLQCSDPY TKDYVQRLRD
401: EPLFLVLAQN VQEYQERVEN HKAAAKVALR RVELVYYKPQ EVYDAMRKLA EQTEVVMEDG DIEAGDEHQA ADDNRGPPPF IVIPEVVPRK PTFPESGRAL
501: MDGLMSLIYK YGDERTKARA MLCHIYHYAI SDEFSVARDL LLMSRLQDGI QLMDISSQIL YNRVMAQLGL CAFRAGLIAD AHGCLSELYA TGRVKELLAQ
601: GVQYSRYHER TPEQERLERR RMMPYHMHIN LELLEATHLI CAMLIEVPYM ASSTYDKRRP MSKTFRRLLE MSERQTFVGP PETVRDHVMA ATRALNKGDH
701: EKAFSVISSL DTWKLLRNKE HILEMLKLKI KEEALRTYLF SYSSCYESLS LDQLTTMFDL SEAHAHSVVS KMMMHDELHA SWDQPTKCIV FQNVDQTRLQ
801: GLIFQMTDRL SVLVESNERA YEARTGGALE GAPPRRRGDQ DSSNMGKWQE NFVSSQGGRR GGGRSGYAGR GGSGQGGGYQ NDRGGQGSRG GYGGGSRFQD
901: GRARNQSGSS SRGDGNGRMV NLNRPGRN
101: LNKQLDKVVR VNESAKIPNG YITTLVLLED FLAEALANKE AKKKMSSSNA KALNAVKQKL KKNNKQYEDL IQKCRENPES FEDDVADDKD VDDDDDESGD
201: DVVDPDKMAS DSEDSGNEDD VSQDGGAWEK KLSKKDKIMD KQFLKDPSEI TWDIVDKKLK EIVASRGKKG TGRVERVEQL TFLTRVAKTP AQKLEILFHV
301: ISAQFDVNPS LLGHMPVNVW KKCVNNMLLV LDILQQYPNI VVDTSVEADE KETQKGADYD GTIHVTGDLV AFLERIDSEF FKSLQCSDPY TKDYVQRLRD
401: EPLFLVLAQN VQEYQERVEN HKAAAKVALR RVELVYYKPQ EVYDAMRKLA EQTEVVMEDG DIEAGDEHQA ADDNRGPPPF IVIPEVVPRK PTFPESGRAL
501: MDGLMSLIYK YGDERTKARA MLCHIYHYAI SDEFSVARDL LLMSRLQDGI QLMDISSQIL YNRVMAQLGL CAFRAGLIAD AHGCLSELYA TGRVKELLAQ
601: GVQYSRYHER TPEQERLERR RMMPYHMHIN LELLEATHLI CAMLIEVPYM ASSTYDKRRP MSKTFRRLLE MSERQTFVGP PETVRDHVMA ATRALNKGDH
701: EKAFSVISSL DTWKLLRNKE HILEMLKLKI KEEALRTYLF SYSSCYESLS LDQLTTMFDL SEAHAHSVVS KMMMHDELHA SWDQPTKCIV FQNVDQTRLQ
801: GLIFQMTDRL SVLVESNERA YEARTGGALE GAPPRRRGDQ DSSNMGKWQE NFVSSQGGRR GGGRSGYAGR GGSGQGGGYQ NDRGGQGSRG GYGGGSRFQD
901: GRARNQSGSS SRGDGNGRMV NLNRPGRN
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.