Factsheet for Zm00001d002737_P002

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
endoplasmic reticulum 3
extracellular 2
vacuole 4
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003685_P001
Zm00001d005238_P001
Zm00001d010441_P001
Zm00001d014873_P001
Zm00001d019182_P001
Zm00001d020479_P005
Zm00001d020588_P001
Zm00001d020635_P001
Zm00001d025407_P001
Zm00001d027359_P001
Zm00001d029511_P001
Zm00001d029554_P001
Zm00001d029828_P001
Zm00001d030011_P001
Zm00001d031414_P001
Zm00001d037950_P004
Zm00001d037951_P001
Zm00001d040830_P001
Zm00001d048502_P002
Zm00001d051050_P001
Zm00001d051103_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Zm00001d037950_P004	AT1G50030.1	23524850
AT3G56150.1	Zm00001d037951_P001	AT1G50030.1	23524850
AT3G56150.1	Zm00001d005238_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d010441_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d014873_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d019182_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020479_P005	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020588_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020635_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029511_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029554_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029828_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d031414_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d040830_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051050_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051103_P004	AT3G57290.1	11029466
AT3G56150.1	Zm00001d027359_P001	AT3G61140.1	11029466
AT3G56150.1	Zm00001d048502_P002	AT3G61140.1	11029466
AT3G56150.1	Zm00001d003685_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d025407_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d030011_P001	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002169_P006	Maize	cytosol	87.31	90.97
Zm00001d002166_P004	Maize	cytosol	87.31	90.97
KXG35906	Sorghum	cytosol	86.89	90.25
Zm00001d020935_P002	Maize	cytosol	74.3	87.48
Os07t0124500-01	Rice	nucleus	77.19	79.91
HORVU2Hr1G058390.1	Barley	cytosol	13.21	78.53
TraesCS5A01G220000.1	Wheat	nucleus	73.89	77.16
TraesCS5D01G228100.1	Wheat	golgi, unclear	73.79	77.05
TraesCS5B01G219100.1	Wheat	nucleus	73.68	76.94
HORVU5Hr1G063770.2	Barley	nucleus	73.27	76.59
TraesCS5A01G406000.1	Wheat	cytosol	71.41	74.97
TraesCS5D01G416000.1	Wheat	cytosol	71.62	74.87
TraesCS5B01G410800.1	Wheat	cytosol	71.62	74.78
HORVU2Hr1G058370.1	Barley	cytosol	13.93	74.18
HORVU5Hr1G098600.1	Barley	cytosol	70.9	74.11
GSMUA_Achr3P04920_001	Banana	cytosol	63.36	68.83
VIT_16s0039g01140.t01	Wine grape	cytosol	5.78	67.47
VIT_08s0007g07180.t01	Wine grape	cytosol	63.47	65.01
CDY65406	Canola	cytosol	54.08	64.37
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	58.72	62.94
PGSC0003DMT400078176	Potato	cytosol	59.24	62.8
CDY16358	Canola	cytosol	53.97	62.71
CDX72169	Canola	cytosol	53.87	62.59
PGSC0003DMT400046928	Potato	cytosol	59.24	62.26
KRH60516	Soybean	endoplasmic reticulum	59.13	61.95
KRH41811	Soybean	cytosol	59.13	61.88
Solyc01g102570.2.1	Tomato	cytosol, nucleus	22.7	61.8
KRH68073	Soybean	endoplasmic reticulum	59.03	61.77
Bra022520.1-P	Field mustard	cytosol	54.8	61.39
Solyc01g102600.2.1	Tomato	cytosol	22.6	61.34
CDY27241	Canola	cytosol	54.8	61.25
AT3G56150.1	Thale cress	cytosol	56.35	60.67
Bra007220.1-P	Field mustard	cytosol	55.73	60.34
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.92	60.32
CDY06037	Canola	cytosol	44.48	59.04
Solyc01g102560.2.1	Tomato	nucleus	18.58	58.06
Bra007396.1-P	Field mustard	cytosol, mitochondrion	47.99	56.3
CDX71953	Canola	cytosol	47.57	56.22
AT3G22860.1	Thale cress	cytosol	45.51	54.78
Solyc01g102590.2.1	Tomato	nucleus	20.85	49.27

Protein Annotations

EntrezGene:103646106	MapMan:17.4.1.3.3	UniProt:A0A1D6E3X5	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717
HAMAP:MF_03002	ProteinID:ONM15228.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250
PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	TMHMM:TMhelix	UniParc:UPI00084387B4
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d002737	EnsemblPlants:Zm00001d002737_P002	EnsemblPlants:Zm00001d002737_T002	SEG:seg	:

Description

Eukaryotic translation initiation factor 3 subunit C

Coordinates

chr2:+:20918928..20924673

Molecular Weight (calculated)

110554.0 Da

IEP (calculated)

5.710

GRAVY (calculated)

-0.653

Length

969 amino acids

Sequence
(BLAST)

001: MILPSNLYSN YFTHVSAASS LMQFPLLFLL LIIAHSWCTL CRASLLEVKE AARTMTSRFW GQGDSESEEE EEEVESEQGS DNDDDGGHGG AGRGAQNRYL
101: KNQEDDSDES DTGHREIRSL RDKHNEEMRS IVDQMRNAMK INDWVSLQES FEKLNKNLEK VVRVNESTKV PKMYIKALVL LEDFKAEAPA NKEAKEKMSS
201: SNSKALNKMS QKLTKNNKQY KEQIQKCREH PESFEDEAAD DKDMDDDDVD ESDAEIEDPD KIAMSESEED HDEEDGDKEG WEQKRSKKDK MMDKQFLKDP
301: SEITWDIVDK KLREIIASRG KKGTGRIERV EQLTFLTRVA KTPAQKLETL FHVISAQFDV NPSLLGHMPV NVWKKCVNNM LLVLDILQQY PNIVVDTSFE
401: PDEKETQKGA DYNGTIHIVG DLVAFLERLD SEFLKTLQCT DPYTKDYVQR LREEPLFLVV AQNVQDYLER VGNLKAAAKV ALRRVELVYY KPQEVYDAMR
501: KLAEQPEDCV DDDDAEAGDE HQAVDDNRGP SPFVAIPEVV HRKPTFPESG RTLMDGLMSL IYKYGDERTK ARAMLCDIYH HAISDEFSVA RDLLLMSHLQ
601: DGVQLMDISS QILFNRVMAQ LGLCAFRAGL INEAHGCLTE LYFTGRVKEL LAQGVQQSRY HEKTPEQERL ERRRQMPYHM HINLELLEAT HLICAMLIEV
701: PNMAASTYDK RRPMSKTFRR LLEVSERQTF VGPPENVRDH VMAATRALKK GDHQKAFSVI NSLEIWKLLR NREHVLEMLK LKIKEEALRT YLSSYSSSYK
801: SLSLNQLTTM FDLSEQHAHS IVSKMMMHEE LQASWHQPTK CTVFHSLDQT RLQELLFQVA EKISVLVETN ERAYELRTGG TLEGLPPRRR GEAQDSSKWQ
901: ESFVASQGRQ GGGNRFGYSG RGAASGQSGG LQRGRGNHVS RGGYGGNTRF QDASAHMVNL NRVGRVVSV

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.