Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65406 | Canola | cytosol | 69.32 | 68.55 |
| CDX72169 | Canola | cytosol | 69.69 | 67.27 |
| CDY16358 | Canola | cytosol | 69.32 | 66.91 |
| Bra022520.1-P | Field mustard | cytosol | 69.57 | 64.74 |
| CDY27241 | Canola | cytosol | 69.57 | 64.59 |
| AT3G56150.1 | Thale cress | cytosol | 70.93 | 63.44 |
| Bra007220.1-P | Field mustard | cytosol | 69.69 | 62.68 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 60.12 | 53.54 |
| KRH41811 | Soybean | cytosol | 61.24 | 53.24 |
| KRH60516 | Soybean | endoplasmic reticulum | 60.99 | 53.08 |
| PGSC0003DMT400078176 | Potato | cytosol | 60.12 | 52.95 |
| KRH68073 | Soybean | endoplasmic reticulum | 60.25 | 52.38 |
| PGSC0003DMT400046928 | Potato | cytosol | 59.75 | 52.17 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 5.34 | 51.81 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 57.39 | 51.79 |
| Solyc01g102560.2.1 | Tomato | nucleus | 19.38 | 50.32 |
| Zm00001d020935_P002 | Maize | cytosol | 51.18 | 50.06 |
| KXG35906 | Sorghum | cytosol | 56.52 | 48.77 |
| Zm00001d002169_P006 | Maize | cytosol | 56.02 | 48.49 |
| Zm00001d002166_P004 | Maize | cytosol | 56.02 | 48.49 |
| HORVU2Hr1G058390.1 | Barley | cytosol | 9.81 | 48.47 |
| Os07t0124500-01 | Rice | nucleus | 56.27 | 48.4 |
| TraesCS5D01G228100.1 | Wheat | golgi, unclear | 55.03 | 47.74 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 54.91 | 47.68 |
| TraesCS5B01G219100.1 | Wheat | nucleus | 54.91 | 47.63 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 54.91 | 47.63 |
| TraesCS5A01G406000.1 | Wheat | cytosol | 54.53 | 47.56 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 54.66 | 47.46 |
| TraesCS5B01G410800.1 | Wheat | cytosol | 54.41 | 47.2 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 54.29 | 47.14 |
| HORVU2Hr1G058370.1 | Barley | cytosol | 10.43 | 46.15 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 3.6 | 46.03 |
| Zm00001d002737_P002 | Maize | vacuole | 54.78 | 45.51 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 20.0 | 45.22 |
| Solyc01g102600.2.1 | Tomato | cytosol | 20.0 | 45.1 |
| EES13928 | Sorghum | cytosol | 49.81 | 44.8 |
| Solyc01g102590.2.1 | Tomato | nucleus | 20.99 | 41.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | EntrezGene:821858 | ProteinID:AEE76685.1 | ArrayExpress:AT3G22860 | EnsemblPlantsGene:AT3G22860 |
| RefSeq:AT3G22860 | TAIR:AT3G22860 | RefSeq:AT3G22860-TAIR-G | EnsemblPlants:AT3G22860.1 | TAIR:AT3G22860.1 | Unigene:At.53443 |
| ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom | UniProt:F4J1N5 | GO:GO:0001731 | GO:GO:0001732 |
| GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 | GO:GO:0031369 |
| GO:GO:0033290 | InterPro:IPR000717 | InterPro:IPR036388 | HAMAP:MF_03002 | RefSeq:NP_188926.4 | InterPro:PCI_dom |
| PFAM:PF01399 | PFAM:PF05470 | PO:PO:0000084 | PO:PO:0007611 | PO:PO:0009031 | PO:PO:0009046 |
| PFscan:PS50250 | PANTHER:PTHR13937 | PANTHER:PTHR13937:SF0 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| Symbol:TIF3C2 | UniParc:UPI0001A7B072 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
Coordinates
chr3:-:8090654..8093248
Molecular Weight (calculated)
91713.3 Da
IEP (calculated)
5.316
GRAVY (calculated)
-0.449
Length
805 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.