CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10462
KRH27589
KRH33363
KRH43983
KRH48239
KRH48727
KRH61614
KRH64883
KRH65148
KRH66844
KRH77911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	KRH27589	AT1G50030.1	23524850
AT3G56150.1	KRH77911	AT1G50030.1	23524850
AT3G56150.1	KRH48239	AT3G61140.1	11029466
AT3G56150.1	KRH65148	AT3G61140.1	11029466
AT3G56150.1	KRH10462	AT4G14110.1	11029466
AT3G56150.1	KRH33363	AT4G14110.1	11029466
AT3G56150.1	KRH43983	AT4G14110.1	11029466
AT3G56150.1	KRH48727	AT5G25780.1	11029466
AT3G56150.1	KRH61614	AT5G25780.1	11029466
AT3G56150.1	KRH64883	AT5G25780.1	11029466
AT3G56150.1	KRH66844	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41811	Soybean	cytosol	96.86	96.76
VIT_16s0039g01140.t01	Wine grape	cytosol	7.68	85.54
KRH68073	Soybean	endoplasmic reticulum	85.62	85.53
CDY65406	Canola	cytosol	63.14	71.74
PGSC0003DMT400046928	Potato	cytosol	71.14	71.37
Solyc01g102570.2.1	Tomato	cytosol, nucleus	27.46	71.35
CDY16358	Canola	cytosol	64.32	71.34
CDX72169	Canola	cytosol	64.0	70.98
Solyc01g102600.2.1	Tomato	cytosol	27.24	70.59
AT3G56150.1	Thale cress	cytosol	68.22	70.11
CDY27241	Canola	cytosol	65.08	69.43
PGSC0003DMT400078176	Potato	cytosol	68.54	69.37
Bra022520.1-P	Field mustard	cytosol	64.86	69.36
GSMUA_Achr3P04920_001	Banana	cytosol	66.59	69.06
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	67.35	68.92
Bra007220.1-P	Field mustard	cytosol	66.27	68.49
Solyc01g102560.2.1	Tomato	nucleus	22.38	66.77
CDY06037	Canola	cytosol	52.32	66.3
Os07t0124500-01	Rice	nucleus	65.73	64.96
Zm00001d020935_P002	Maize	cytosol	57.73	64.88
KXG35906	Sorghum	cytosol	65.08	64.52
HORVU2Hr1G058390.1	Barley	cytosol	11.35	64.42
Zm00001d002169_P006	Maize	cytosol	64.65	64.3
Zm00001d002166_P004	Maize	cytosol	64.54	64.19
Bra007396.1-P	Field mustard	cytosol, mitochondrion	56.32	63.08
TraesCS5A01G220000.1	Wheat	nucleus	63.24	63.04
TraesCS5A01G406000.1	Wheat	cytosol	62.81	62.95
HORVU5Hr1G063770.2	Barley	nucleus	63.03	62.89
TraesCS5B01G410800.1	Wheat	cytosol	62.92	62.72
CDX71953	Canola	cytosol	55.57	62.68
TraesCS5D01G416000.1	Wheat	cytosol	62.7	62.57
TraesCS5D01G228100.1	Wheat	golgi, unclear	62.7	62.5
TraesCS5B01G219100.1	Wheat	nucleus	62.59	62.39
HORVU5Hr1G098600.1	Barley	cytosol	61.62	61.49
AT3G22860.1	Thale cress	cytosol	53.08	60.99
HORVU2Hr1G058370.1	Barley	cytosol	11.78	59.89
Zm00001d002737_P002	Maize	vacuole	61.95	59.13
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.89	57.14
Solyc01g102590.2.1	Tomato	nucleus	24.76	55.85
EES13928	Sorghum	cytosol	53.51	55.31

Protein Annotations

EntrezGene:100779751	MapMan:17.4.1.3.3	EMBL:ACUP02003367	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom
EnsemblPlantsGene:GLYMA_05G245100	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	UniProt:I1K5D3	InterPro:IPR000717
EnsemblPlants:KRH60516	ProteinID:KRH60516	ProteinID:KRH60516.1	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI000233A591	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:41916780..41921153

Molecular Weight (calculated)

104318.0 Da

IEP (calculated)

5.514

GRAVY (calculated)

-0.600

Length

925 amino acids

Sequence
(BLAST)

001: MASRFWTQGG SDSEEEESDY DEEVDTTVGE SGSQAVTSRY LQDNASDSDD SDGQKRIVRS AKDKRFEEMA STVDQMKNAM KINDWVSLQE SFDKINKQLE
101: KVMRVTESEK VPNLYIKALV MLEDFLAQAL ANKDAKKKMS SSNAKALNSM KQKLKKNNKQ YEDLINKCRE NPESEEEKEE ESEEEYDSDG EIIDPDQLQK
201: PEAKSDSEAS QYEDEKPDAG EGPWDQKLSK KDRLLDRQFM KNPSEITWDA VNKKFKEVVA ARGRKGTGRF EQVEQLTFLT KVAKTPAQKL EILFSVVSAQ
301: FDVNPGLNGH VPINVWKKCV QNMLIILDIL VQYPNIVADD LVEPDENETQ KGPEHNGTIR VWGNLVAFLE RIDVEFFKSL QCIDPHTRDY VERLRDEPTF
401: LVLAQNVQEY LERVGNFKAA SKVALRRVEL IYYKPQEVYD AMRKLTELTE DGDNGGEASE KEFEESRIPT AFVVTPEVVA RKPTFPENSR TLMDVLVSMI
501: YKYGDERTKA RAMLCDIYHH ALLDEFSTAR DLLLMSHLQD SVQHMDISTQ ILFNRAMSQL GLCAFRVGLI SEAHGCLSEL YSGGRVKELL AQGVSQSRYH
601: EKTPEQERLE RRRQMPYHMH INLELLEAVH LVSAMLLEVP NMAANVHDAK RKVISKTFRR LLEVSEKQTF TGPPENVRDH VMAATRVLNK GDFQKAFDII
701: VSLDVWKFVR NRDTVLEMLK DKIKEEALRT YLFTFSSSYE SLSLDQLTKF FDLSVCRTHS IVSRMMINEE LHASWDQPTG CILFQDVEHS RLQALAFQLT
801: EKLSVLAESN EKAAEARVGG GGLDLPLRRR DGQDYAAAAA AGSGTASSGG RWQDLSLSQP RQGSGRAGYG GRPMALGQAA GSGYSRGRGR GSYGGSGRTA
901: QRGSALRGPQ GDGSTRMVSL KGVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.