Factsheet for TraesCS5A01G220000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G188800.1
TraesCS1A01G227600.1
TraesCS1B01G196500.2
TraesCS1B01G241900.3
TraesCS1D01G187600.1
TraesCS1D01G229300.1
TraesCS2A01G301900.1
TraesCS2D01G300400.2
TraesCS4A01G232600.1
TraesCS4B01G083200.1
TraesCS4B01G356500.1
TraesCS4D01G081300.1
TraesCS4D01G350200.1
TraesCS5A01G261900.1
TraesCS5A01G442500.1
TraesCS5A01G525900.1
TraesCS5B01G260000.2
TraesCS5B01G446600.1
TraesCS5D01G238500.1
TraesCS5D01G269200.1
TraesCS5D01G449900.2
TraesCS6B01G307400.1
TraesCS6D01G406100.1
TraesCS7B01G257700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	TraesCS1A01G227600.1	AT1G50030.1	23524850
AT3G56150.1	TraesCS1B01G241900.3	AT1G50030.1	23524850
AT3G56150.1	TraesCS1D01G229300.1	AT1G50030.1	23524850
AT3G56150.1	TraesCS5A01G261900.1	AT3G57290.1	11029466
AT3G56150.1	TraesCS5B01G260000.2	AT3G57290.1	11029466
AT3G56150.1	TraesCS5D01G269200.1	AT3G57290.1	11029466
AT3G56150.1	TraesCS1A01G188800.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS1B01G196500.2	AT3G61140.1	11029466
AT3G56150.1	TraesCS1D01G187600.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS4B01G356500.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS4D01G350200.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS5A01G525900.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS5D01G238500.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS7B01G257700.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS2A01G301900.1	AT4G14110.1	11029466
AT3G56150.1	TraesCS2D01G300400.2	AT4G14110.1	11029466
AT3G56150.1	TraesCS4A01G232600.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS4B01G083200.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS4D01G081300.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5A01G442500.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5B01G446600.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5D01G449900.2	AT5G25780.1	11029466
AT3G56150.1	TraesCS6B01G307400.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS6D01G406100.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G228100.1	Wheat	golgi, unclear	98.38	98.38
HORVU5Hr1G063770.2	Barley	nucleus	98.28	98.38
TraesCS5B01G219100.1	Wheat	nucleus	98.28	98.28
TraesCS5A01G406000.1	Wheat	cytosol	86.85	87.32
KXG35906	Sorghum	cytosol	82.76	82.32
Os07t0124500-01	Rice	nucleus	82.33	81.62
Zm00001d002169_P006	Maize	cytosol	81.25	81.08
Zm00001d002166_P004	Maize	cytosol	81.14	80.97
Zm00001d020935_P002	Maize	cytosol	68.64	77.4
Zm00001d002737_P002	Maize	vacuole	77.16	73.89
GSMUA_Achr3P04920_001	Banana	cytosol	67.24	69.96
VIT_16s0039g01140.t01	Wine grape	cytosol	6.14	68.67
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	4.53	66.67
CDY65406	Canola	cytosol	57.76	65.85
VIT_08s0007g07180.t01	Wine grape	cytosol	66.49	65.22
CDY16358	Canola	cytosol	58.51	65.11
CDX72169	Canola	cytosol	58.41	64.99
PGSC0003DMT400078176	Potato	cytosol	63.04	64.0
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	62.28	63.94
CDY27241	Canola	cytosol	59.38	63.55
KRH41811	Soybean	cytosol	63.36	63.5
KRH60516	Soybean	endoplasmic reticulum	63.04	63.24
PGSC0003DMT400046928	Potato	cytosol	62.82	63.23
Bra022520.1-P	Field mustard	cytosol	58.84	63.12
KRH68073	Soybean	endoplasmic reticulum	62.82	62.96
Solyc01g102570.2.1	Tomato	cytosol, nucleus	24.03	62.64
Bra007220.1-P	Field mustard	cytosol	60.34	62.57
AT3G56150.1	Thale cress	cytosol	60.34	62.22
Solyc01g102600.2.1	Tomato	cytosol	23.92	62.18
Solyc01g102560.2.1	Tomato	nucleus	20.26	60.65
CDY06037	Canola	cytosol	46.88	59.59
Bra007396.1-P	Field mustard	cytosol, mitochondrion	51.08	57.38
CDX71953	Canola	cytosol	50.22	56.83
AT3G22860.1	Thale cress	cytosol	47.63	54.91
Solyc01g102590.2.1	Tomato	nucleus	22.41	50.73

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0031369	InterPro:IPR000717	InterPro:IPR036388	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:TraesCS5A01G220000	EnsemblPlants:TraesCS5A01G220000.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:436629301..436634185

Molecular Weight (calculated)

104895.0 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.710

Length

928 amino acids

Sequence
(BLAST)

001: MASRFWGQGD SDSEEEVDEI ESEQGSDSEK SEAGDGGRDG SKNRYLNKYT QDSDDSDTES HRVIRSLKDK RNDEMKATAD QMRNAMKIND WISLQECFDK
101: LNKQLDKVVR VNESAKIPNG YITTLVLLED FLAEALANKE AKKKMSSSNA KALNAVKQKL KKNNKQYEDL IQKCRENPES FEDDVADDKD VDDDDDESGD
201: DVVDPDKMAS DSEDSGNEDD VSQDGGAWEK KLSKKDKIMD KQFLKDPSEI TWDIVDKKLK EIVASRGKKG TGRVERVEQL TFLTRVAKTP AQKLEILFHV
301: ISAQFDVNPS LLGHMPVNVW KKCVNNMLLV LDILQQYPNI VVDTSVEADE KETQKGADYD GTIHVTGDLV AFLERIDSEF FKSLQCSDPY TKDYVQRLRD
401: EPLFLVLAQN VQEYQERVEN HKAAAKVALR RVELVYYKPQ EVYDAMRKLA EQTEVVMEDG DIEAGDEHQA ADDNRGPPPF IVIPEVVPRK PTFPESGRAL
501: MDGLMSLIYK YGDERTKARA MLCHIYHYAI SDEFSVARDL LLMSRLQDGI QLMDISSQIL YNRVMAQLGL CAFRAGLIAD AHGCLSELYA TGRVKELLAQ
601: GVQYSRYHER TPEQERLERR RMMPYHMHIN LELLEATHLI CAMLIEVPYM ASSTYDKRRP MSKTFRRLLE MSERQTFVGP PETVRDHVMA ATRALNKGDH
701: EKAFSVISSL DTWKLLRNKE HILEMLKLKI KEEALRTYLF SYSSCYESLS LDQLTTMFDL SEAHAHSVVS KMMMHDELHA SWDQPTKCIV FQNVDQTRLQ
801: GLIFQMTDRL SVLVESNERA YEARTGGALE GAPPRRRGDQ DSSNLGKWQE NFVSSQGGRR GGGRSGYGGR GGSGQGGGYQ NDRGGQGSRG GYGGGSRFQD
901: GRARNQSGSS SRGDGNGRMV NLNRPGRN

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.