Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G074740.2 | Barley | cytosol | 84.18 | 84.18 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 94.39 | 83.33 |
| Os04t0428900-01 | Rice | cytosol | 81.12 | 81.12 |
| OQU81583 | Sorghum | cytosol | 79.08 | 79.08 |
| Zm00001d003685_P001 | Maize | extracellular | 78.06 | 78.06 |
| Zm00001d025407_P001 | Maize | cytosol | 77.55 | 77.55 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 63.27 | 62.94 |
| Solyc01g104600.2.1 | Tomato | cytosol | 61.22 | 60.91 |
| PGSC0003DMT400076584 | Potato | cytosol | 59.18 | 58.88 |
| KRH43983 | Soybean | cytosol | 59.18 | 58.88 |
| KRH10462 | Soybean | cytosol | 58.67 | 58.38 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 58.67 | 58.38 |
| CDY01192 | Canola | cytosol | 57.14 | 56.85 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 92.86 | 56.35 |
| CDY12369 | Canola | cytosol | 56.63 | 56.35 |
| Bra038444.1-P | Field mustard | cytosol | 56.63 | 56.35 |
| AT4G14110.1 | Thale cress | cytosol | 56.12 | 55.84 |
| CDY27125 | Canola | cytosol | 56.12 | 55.84 |
| KRH33363 | Soybean | cytosol | 50.51 | 54.4 |
| CDY12734 | Canola | cytosol | 58.16 | 52.29 |
| Bra032760.1-P | Field mustard | cytosol | 57.65 | 51.13 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.3.3.1.8 | InterPro:COP9_CSN8 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009753 | GO:GO:0009987 |
| GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF10075 |
| PFscan:PS50250 | PANTHER:PTHR13339 | EnsemblPlantsGene:TraesCS2A01G301900 | EnsemblPlants:TraesCS2A01G301900.1 | : | : |
Description
No Description!
Coordinates
chr2A:-:516888607..516892404
Molecular Weight (calculated)
22068.2 Da
IEP (calculated)
5.861
GRAVY (calculated)
-0.173
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSAVHAAL SAKSYSAIAG LCDDLLLQVA SRGVATDDWP YAVHLLAHLY LNDQNSARFL WKTVPQEVKD AHPELGAIWK IGQCLWNRDY AGIYTSAQGF
101: EWGPEIADFV SAFLESYRKR IFELLTSAYT TISIADVAHF MGMSEEDATN YAVQNGWSLD VATKMLTVRK QKPQTNQKLD PNKLQRLTEC VFHLEH
101: EWGPEIADFV SAFLESYRKR IFELLTSAYT TISIADVAHF MGMSEEDATN YAVQNGWSLD VATKMLTVRK QKPQTNQKLD PNKLQRLTEC VFHLEH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.