Factsheet for VIT_12s0055g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_06s0004g00730.t01
VIT_10s0003g03710.t01
VIT_11s0016g01990.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_14s0171g00270.t01
VIT_15s0021g01580.t01
VIT_15s0048g01980.t01
VIT_16s0039g01140.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	VIT_15s0021g01580.t01	AT1G02090.1	10330469
AT4G14110.1	VIT_15s0021g01580.t01	AT1G02090.1	11742986
AT4G14110.1	VIT_15s0021g01580.t01	AT1G02090.1	12615944
AT4G14110.1	VIT_03s0038g04360.t01	AT1G22920.1	11701877
AT4G14110.1	VIT_03s0038g04360.t01	AT1G22920.1	11742986
AT4G14110.1	VIT_11s0016g01990.t01	AT1G64280.1	19490895
AT4G14110.1	VIT_03s0038g04360.t01	AT1G71230.1	11742986
AT4G14110.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G14110.1	VIT_06s0004g00730.t01	AT3G13550.1	11877375
AT4G14110.1	VIT_16s0039g01140.t01	AT3G56150.1	11029466
AT4G14110.1	VIT_15s0048g01980.t01	AT3G61140.1	11701877
AT4G14110.1	VIT_15s0048g01980.t01	AT3G61140.1	12615944
AT4G14110.1	VIT_15s0048g01980.t01	AT3G61140.1	9811788
AT4G14110.1	VIT_12s0055g00390.t01	AT4G14110.1	12615944
AT4G14110.1	VIT_14s0171g00270.t01	AT5G14250.1	11742986
AT4G14110.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT4G14110.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT4G14110.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944
AT4G14110.1	VIT_10s0003g03710.t01	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43983	Soybean	cytosol	78.68	78.68
KRH10462	Soybean	cytosol	76.14	76.14
PGSC0003DMT400076584	Potato	cytosol	73.1	73.1
Solyc01g104600.2.1	Tomato	cytosol	72.08	72.08
KRH33363	Soybean	cytosol	66.5	71.98
AT4G14110.1	Thale cress	cytosol	71.07	71.07
Bra038444.1-P	Field mustard	cytosol	71.07	71.07
CDY12369	Canola	cytosol	71.07	71.07
CDY01192	Canola	cytosol	70.05	70.05
CDY27125	Canola	cytosol	69.54	69.54
GSMUA_Achr2P20500_001	Banana	cytosol	69.04	69.04
CDY12734	Canola	cytosol	71.07	64.22
Bra032760.1-P	Field mustard	cytosol	70.56	62.9
Os04t0428900-01	Rice	cytosol	58.38	58.67
TraesCS2A01G301900.1	Wheat	golgi	58.38	58.67
OQU81583	Sorghum	cytosol	55.84	56.12
Zm00001d003685_P001	Maize	extracellular	54.82	55.1
Zm00001d025407_P001	Maize	cytosol	54.31	54.59
HORVU2Hr1G074740.2	Barley	cytosol	53.81	54.08
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	57.87	51.35
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.85	34.67

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100257267	wikigene:100257267	MapMan:19.2.3.3.1.8	EMBL:AM458544	ProteinID:CAN67908
ProteinID:CAN67908.1	ProteinID:CBI20002	ProteinID:CBI20002.3	InterPro:COP9_CSN8	InterPro:CSN8_PSD8_EIF3K	UniProt:D7ST88
EMBL:FN595228	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009416
GO:GO:0009628	GO:GO:0009719	GO:GO:0009753	GO:GO:0009987	GO:GO:0010387	GO:GO:0016043
GO:GO:0019538	InterPro:IPR000717	EntrezGene:LOC100257267	wikigene:LOC100257267	InterPro:PCI_dom	PFAM:PF10075
PFscan:PS50250	PANTHER:PTHR13339	TIGR:TC68006	UniParc:UPI00019845E2	ArrayExpress:VIT_12s0055g00390	EnsemblPlantsGene:VIT_12s0055g00390
EnsemblPlants:VIT_12s0055g00390.t01	unigene:Vvi.8879	RefSeq:XP_002266060	RefSeq:XP_002266060.1	:	:

Description

No Description!

Coordinates

chr12:+:13190026..13196395

Molecular Weight (calculated)

22557.9 Da

IEP (calculated)

4.896

GRAVY (calculated)

-0.186

Length

197 amino acids

Sequence
(BLAST)

001: MDFTPIKDAM TSKSYGKIAD VCDDLMLQVS TQGIAFEDEW PYTIHLLGHI YVDDINSARF LWKSIPPAIK ERQPEVGAAW KIGQRLWTRD YAAVHEAIRG
101: FEWSPEAQCI VAAFSELYTK KMFQLLLSAY STISIQDTAL FLGMSEDDVT NYVVEQGWTV DSASRMLTVK KQPIVTEQKL DPSKLQRLTE YVFHLEH

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.