Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01192 | Canola | cytosol | 88.53 | 97.97 |
| CDY12369 | Canola | cytosol | 83.03 | 91.88 |
| CDY27125 | Canola | cytosol | 83.03 | 91.88 |
| AT4G14110.1 | Thale cress | cytosol | 81.65 | 90.36 |
| KRH43983 | Soybean | cytosol | 64.68 | 71.57 |
| PGSC0003DMT400076584 | Potato | cytosol | 64.22 | 71.07 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 64.22 | 71.07 |
| Solyc01g104600.2.1 | Tomato | cytosol | 62.84 | 69.54 |
| KRH10462 | Soybean | cytosol | 61.93 | 68.53 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 58.72 | 64.97 |
| KRH33363 | Soybean | cytosol | 53.21 | 63.74 |
| Os04t0428900-01 | Rice | cytosol | 53.21 | 59.18 |
| TraesCS2A01G301900.1 | Wheat | golgi | 52.29 | 58.16 |
| OQU81583 | Sorghum | cytosol | 49.08 | 54.59 |
| Zm00001d003685_P001 | Maize | extracellular | 49.08 | 54.59 |
| Zm00001d025407_P001 | Maize | cytosol | 48.17 | 53.57 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 47.25 | 52.55 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 52.29 | 51.35 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.38 | 34.67 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.3.3.1.8 | UniProt:A0A078FIB8 | EnsemblPlants:CDY12734 | ProteinID:CDY12734 | ProteinID:CDY12734.1 |
| InterPro:COP9_CSN8 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00070308001 | InterPro:IPR000717 |
| InterPro:PCI_dom | PFAM:PF10075 | PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI0004EDF42D | : |
Description
BnaC04g29070DBnaC04g29070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIB8]
Coordinates
chrLK032026:-:490746..492672
Molecular Weight (calculated)
24862.7 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.088
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSPVTEAL AVKSFDKIAD ICDNLMLQVA SEGISFHDDW PYAIHLLGYF YVDDCDSARF LWKTIPTSVK ESKPEVVAAW RIGQRLWTRD YAGVYEAIRG
101: YDWSPEAKDM VAAFSAPLLH LQEINCSMPG PLNYLIDVYT KRMFQLLLSA YSTIAIRDLA LFLGMTEDDA TTYVVENGWT VDTASQMVTV KKQAVKREQK
201: VDSSKLQRLT EYVFHLEH
101: YDWSPEAKDM VAAFSAPLLH LQEINCSMPG PLNYLIDVYT KRMFQLLLSA YSTIAIRDLA LFLGMTEDDA TTYVVENGWT VDTASQMVTV KKQAVKREQK
201: VDSSKLQRLT EYVFHLEH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.