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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • mitochondrion 4
  • endoplasmic reticulum 1
  • plastid 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:endoplasmic reticulum, golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67853
CDX70553
CDX71478
CDX71533
CDX77644
CDX78568
CDX78656
CDX83249
CDX85608
CDX87735
CDX90073
CDX91076
CDY00413
CDY01192
CDY01302
CDY02426
CDY03235
CDY04472
CDY04768
CDY12369
CDY12734
CDY15130
CDY21400
CDY22374
CDY23617
CDY25761
CDY26433
CDY27125
CDY32798
CDY33461
CDY35152
CDY38053
CDY38538
CDY43957
CDY45683
CDY49389
CDY52333
CDY59253
CDY61016
CDY65304

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14250.1 CDX90073 AT1G02090.1 12615944
AT5G14250.1 CDY00413 AT1G02090.1 12615944
AT5G14250.1 CDY01302 AT1G02090.1 12615944
AT5G14250.1 CDY15130 AT1G02090.1 12615944
AT5G14250.1 CDY38053 AT1G02090.1 12615944
AT5G14250.1 CDX90073 AT1G02090.1 15703063
AT5G14250.1 CDY00413 AT1G02090.1 15703063
AT5G14250.1 CDY01302 AT1G02090.1 15703063
AT5G14250.1 CDY15130 AT1G02090.1 15703063
AT5G14250.1 CDY38053 AT1G02090.1 15703063
AT5G14250.1 CDY04768 AT1G22920.1 11742986
AT5G14250.1 CDY21400 AT1G22920.1 11742986
AT5G14250.1 CDY25761 AT1G22920.1 11742986
AT5G14250.1 CDY04768 AT1G22920.1 15703063
AT5G14250.1 CDY21400 AT1G22920.1 15703063
AT5G14250.1 CDY25761 AT1G22920.1 15703063
AT5G14250.1 CDX71478 AT2G26990.1 12615944
AT5G14250.1 CDX83249 AT2G26990.1 12615944
AT5G14250.1 CDY04472 AT2G26990.1 12615944
AT5G14250.1 CDY38538 AT2G26990.1 12615944
AT5G14250.1 CDX71478 AT2G26990.1 15703063
AT5G14250.1 CDX83249 AT2G26990.1 15703063
AT5G14250.1 CDY04472 AT2G26990.1 15703063
AT5G14250.1 CDY38538 AT2G26990.1 15703063
AT5G14250.1 CDY23617 AT3G13550.1 11877375
AT5G14250.1 CDY59253 AT3G13550.1 11877375
AT5G14250.1 CDX67853 AT3G61140.1 12615944
AT5G14250.1 CDY45683 AT3G61140.1 12615944
AT5G14250.1 CDY52333 AT3G61140.1 12615944
AT5G14250.1 CDY65304 AT3G61140.1 12615944
AT5G14250.1 CDX67853 AT3G61140.1 15703063
AT5G14250.1 CDY45683 AT3G61140.1 15703063
AT5G14250.1 CDY52333 AT3G61140.1 15703063
AT5G14250.1 CDY65304 AT3G61140.1 15703063
AT5G14250.1 CDY01192 AT4G14110.1 11742986
AT5G14250.1 CDY12369 AT4G14110.1 11742986
AT5G14250.1 CDY12734 AT4G14110.1 11742986
AT5G14250.1 CDY27125 AT4G14110.1 11742986
AT5G14250.1 CDY01192 AT4G14110.1 12615944
AT5G14250.1 CDY12369 AT4G14110.1 12615944
AT5G14250.1 CDY12734 AT4G14110.1 12615944
AT5G14250.1 CDY27125 AT4G14110.1 12615944
AT5G14250.1 CDY01192 AT4G14110.1 15703063
AT5G14250.1 CDY12369 AT4G14110.1 15703063
AT5G14250.1 CDY12734 AT4G14110.1 15703063
AT5G14250.1 CDY27125 AT4G14110.1 15703063
AT5G14250.1 CDX70553 AT5G14250.1 12615944
AT5G14250.1 CDX78568 AT5G14250.1 12615944
AT5G14250.1 CDX78656 AT5G14250.1 12615944
AT5G14250.1 CDX85608 AT5G14250.1 12615944
AT5G14250.1 CDX91076 AT5G14250.1 12615944
AT5G14250.1 CDY26433 AT5G14250.1 12615944
AT5G14250.1 CDX71533 AT5G42970.1 11742986
AT5G14250.1 CDY02426 AT5G42970.1 11742986
AT5G14250.1 CDY22374 AT5G42970.1 11742986
AT5G14250.1 CDY61016 AT5G42970.1 11742986
AT5G14250.1 CDX71533 AT5G42970.1 12615944
AT5G14250.1 CDY02426 AT5G42970.1 12615944
AT5G14250.1 CDY22374 AT5G42970.1 12615944
AT5G14250.1 CDY61016 AT5G42970.1 12615944
AT5G14250.1 CDX71533 AT5G42970.1 15703063
AT5G14250.1 CDY02426 AT5G42970.1 15703063
AT5G14250.1 CDY22374 AT5G42970.1 15703063
AT5G14250.1 CDY61016 AT5G42970.1 15703063
AT5G14250.1 CDX77644 AT5G46210.1 16844902
AT5G14250.1 CDX87735 AT5G46210.1 16844902
AT5G14250.1 CDY03235 AT5G46210.1 16844902
AT5G14250.1 CDY33461 AT5G46210.1 16844902
AT5G14250.1 CDY35152 AT5G46210.1 16844902
AT5G14250.1 CDY43957 AT5G46210.1 16844902
AT5G14250.1 CDY32798 AT5G56280.1 11701877
AT5G14250.1 CDY49389 AT5G56280.1 11701877
AT5G14250.1 CDY32798 AT5G56280.1 12615944
AT5G14250.1 CDY49389 AT5G56280.1 12615944
AT5G14250.1 CDY32798 AT5G56280.1 15703063
AT5G14250.1 CDY49389 AT5G56280.1 15703063
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78656 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 29.32 51.39
CDX85608 Canola cytosol 45.45 47.06
CDX78568 Canola cytosol 45.0 47.03
CDX91076 Canola cytosol 45.45 46.95
AT5G14250.1 Thale cress cytosol 41.36 42.42
CDX70553 Canola mitochondrion 31.82 38.36
Zm00001d028517_P001 Maize cytosol 9.09 36.36
KRH57651 Soybean cytosol 34.32 35.7
VIT_14s0171g00270.t01 Wine grape cytosol 33.86 35.14
KRG94317 Soybean cytosol 32.95 34.28
Solyc02g093920.2.1 Tomato cytosol 32.05 32.94
PGSC0003DMT400052100 Potato cytosol 31.82 32.71
GSMUA_Achr11P... Banana cytosol 30.23 31.52
EES13281 Sorghum cytosol 30.0 30.77
GSMUA_AchrUn_... Banana cytosol 28.18 30.24
Os08t0119000-01 Rice cytosol 29.09 30.05
TraesCS7B01G216600.2 Wheat cytosol 28.18 29.04
TraesCS7D01G312600.2 Wheat cytosol 28.18 29.04
Zm00001d049652_P001 Maize cytosol 27.73 28.71
Zm00001d035130_P001 Maize cytosol 30.23 28.54
TraesCS7A01G315600.1 Wheat cytosol 27.5 28.47
HORVU7Hr1G075150.4 Barley mitochondrion 28.18 25.46
Protein Annotations
Gene3D:1.25.40.570MapMan:35.1UniProt:A0A078GP46EnsemblPlants:CDY26433ProteinID:CDY26433ProteinID:CDY26433.1
InterPro:CSN3InterPro:F-box-assoc_dom_typ1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0008180EnsemblPlantsGene:GSBRNA2T00035225001InterPro:IPR000717InterPro:PCI_domPFAM:PF01399PFAM:PF07734
PFscan:PS50250PANTHER:PTHR10758PANTHER:PTHR10758:SF1SMART:SM00088SMART:SM00753SUPFAM:SSF46785
UniParc:UPI0004EDE3C3InterPro:WH_DNA-bd_sfSEG:seg:::
Description
BnaC09g42350DBnaC09g42350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP46]
Coordinates
chrLK032190:-:129842..134733
Molecular Weight (calculated)
49551.6 Da
IEP (calculated)
5.976
GRAVY (calculated)
-0.126
Length
440 amino acids
Sequence
(BLAST)
001: MALALKNILI RFTIISPYAR LLTWCAPYGT HPRLGGTWRQ SHPHSGDRHF KHNYDDDDVV VLILAVVTLC KRFKDRVLEL KDPIRGVAPL VSAVRKVQVS
101: ANCSTVLHPD CLQLCLQAKC YKAGYDGMNG IGLKRFQKTS ELHYNPYYEV GNRYNDGKIS ELEAVVVAQS SDLEQDKDTG LVKQAVSSLY KRNILGLTHK
201: YLTLSLQDIV NMMVQTANAK EAETHVIQMI QDGQIHALIN QKDGMVRLLE DPEQYKTSEM IEVMDSVIQR TIGLSKNLLA MDESLSCDPL YLGKVTETFG
301: PPLSLPCEAY FQDTVSLSSV REDQLVVLFQ TWDILTFEIW ISTKIGDDPN AVSWNNKFFL SANIKQLIHP QWQFPASASF FIDEEKKVAV VFDKDTDIRN
401: PTREVAYIIG VDGSLKEAAD VRECADRLCE CLSLANVLSL
Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.