Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57651 | Soybean | cytosol | 77.59 | 77.78 |
| KRG94317 | Soybean | cytosol | 77.12 | 77.31 |
| Solyc02g093920.2.1 | Tomato | cytosol | 76.42 | 75.7 |
| PGSC0003DMT400052100 | Potato | cytosol | 76.18 | 75.47 |
| GSMUA_Achr11P... | Banana | cytosol | 70.05 | 70.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.04 | 68.29 |
| CDX91076 | Canola | cytosol | 66.75 | 66.43 |
| CDX85608 | Canola | cytosol | 66.04 | 65.88 |
| Bra023453.1-P | Field mustard | cytosol | 65.8 | 65.65 |
| AT5G14250.1 | Thale cress | cytosol | 66.27 | 65.5 |
| Os08t0119000-01 | Rice | cytosol | 65.57 | 65.26 |
| CDX78568 | Canola | cytosol | 64.62 | 65.08 |
| Bra006246.1-P | Field mustard | cytosol | 64.15 | 64.61 |
| EES13281 | Sorghum | cytosol | 63.68 | 62.94 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 61.79 | 61.36 |
| Zm00001d049652_P001 | Maize | cytosol | 61.32 | 61.18 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 61.56 | 61.12 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 58.49 | 58.35 |
| Zm00001d035130_P001 | Maize | cytosol | 63.44 | 57.73 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 61.56 | 53.59 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 31.37 | 53.2 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 31.13 | 52.59 |
| Zm00001d028517_P001 | Maize | cytosol | 13.44 | 51.82 |
| CDX70553 | Canola | mitochondrion | 44.58 | 51.78 |
| CDY26433 | Canola | mitochondrion | 35.14 | 33.86 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100266172 | wikigene:100266172 | MapMan:19.2.3.3.1.3 | ProteinID:CBI40066 | ProteinID:CBI40066.3 |
| InterPro:CSN3 | UniProt:D7UBF1 | EMBL:FN596749 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0010971 | GO:GO:0019538 | InterPro:IPR000717 | EntrezGene:LOC100266172 | wikigene:LOC100266172 | InterPro:PCI_dom |
| PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | TIGR:TC52915 | UniParc:UPI0001984C9F | ArrayExpress:VIT_14s0171g00270 | EnsemblPlantsGene:VIT_14s0171g00270 | EnsemblPlants:VIT_14s0171g00270.t01 |
| unigene:Vvi.7012 | InterPro:WH_DNA-bd_sf | RefSeq:XP_002263731 | RefSeq:XP_002263731.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr14:+:26101902..26112298
Molecular Weight (calculated)
48007.1 Da
IEP (calculated)
6.061
GRAVY (calculated)
-0.145
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVEAVVTQ IQGLSGGSGD ISLLHSLLKQ ADDLLHNEST RLAPFLEQLD PSIHTLGYLY LLEACTSTPI PKEQANQLVL SIANFINNCS AEQIHLAPDK
101: FVSLCKRLKD QVILLEAPMR GVAPMLTAVR KLQSASELLT VLHPDFLLLC LLAKCYKTGL CILEDDIFEV DQPRDFFLYC YYGGMICIGQ KRFRKALELL
201: HNVVTAPMST INAIAVEAYK KYILVSLIHN GQFSTTFPKY TSSVAQRNLK NFSQPYLDLA NSYSSGKISE PEKCIQTNRE KFEADKNLGL VKQVVSSMYK
301: RNIQRLTQTY LTLSLQDIAN TVQLNSPKEA EMHVLQMIQD GEIFATINQK DGMVRFQEDP EQYKTCEMIE HIDSSIQRIM TLSKKLTTMD ELISCDPLYL
401: AKAGRERQRF DFDDYDTVPQ KFNI
101: FVSLCKRLKD QVILLEAPMR GVAPMLTAVR KLQSASELLT VLHPDFLLLC LLAKCYKTGL CILEDDIFEV DQPRDFFLYC YYGGMICIGQ KRFRKALELL
201: HNVVTAPMST INAIAVEAYK KYILVSLIHN GQFSTTFPKY TSSVAQRNLK NFSQPYLDLA NSYSSGKISE PEKCIQTNRE KFEADKNLGL VKQVVSSMYK
301: RNIQRLTQTY LTLSLQDIAN TVQLNSPKEA EMHVLQMIQD GEIFATINQK DGMVRFQEDP EQYKTCEMIE HIDSSIQRIM TLSKKLTTMD ELISCDPLYL
401: AKAGRERQRF DFDDYDTVPQ KFNI
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.