Factsheet for VIT_06s0004g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g03710.t01
VIT_10s0003g04360.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_12s0059g01420.t01
VIT_14s0171g00270.t01
VIT_15s0048g02140.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	VIT_12s0059g01420.t01	AT2G32950.1	11877375
AT3G13550.1	VIT_12s0059g01420.t01	AT2G32950.1	18552200
AT3G13550.1	VIT_10s0003g04360.t01	AT4G05420.1	16844902
AT3G13550.1	VIT_10s0003g04360.t01	AT4G05420.1	18552200
AT3G13550.1	VIT_15s0048g02140.t01	AT4G10180.1	16844902
AT3G13550.1	VIT_15s0048g02140.t01	AT4G10180.1	18552200
AT3G13550.1	VIT_12s0055g00390.t01	AT4G14110.1	11877375
AT3G13550.1	VIT_14s0171g00270.t01	AT5G14250.1	11877375
AT3G13550.1	VIT_12s0035g01450.t01	AT5G42970.1	11877375
AT3G13550.1	VIT_18s0001g12250.t01	AT5G42970.1	11877375
AT3G13550.1	VIT_10s0003g03710.t01	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22180_001	Banana	cytosol	61.36	77.7
Solyc01g005840.2.1	Tomato	plastid	73.86	71.82
KRH42820	Soybean	plastid	69.89	69.89
AT3G13550.1	Thale cress	mitochondrion	71.59	69.23
Bra027422.1-P	Field mustard	plastid	71.02	68.31
CDY23617	Canola	plastid	70.45	67.76
CDY59253	Canola	mitochondrion	70.45	67.76
TraesCS2A01G187000.1	Wheat	plastid	71.59	66.32
TraesCS2B01G220200.1	Wheat	plastid	71.02	65.1
Os07t0577400-01	Rice	nucleus	72.73	63.37
Zm00001d021904_P001	Maize	plastid	65.34	62.5
EER97436	Sorghum	plastid	65.91	62.03
VIT_19s0015g01190.t01	Wine grape	cytosol	44.32	52.7
VIT_02s0025g01050.t01	Wine grape	cytosol	43.75	52.03
VIT_03s0038g02390.t01	Wine grape	cytosol	43.75	52.03
VIT_06s0004g08200.t01	Wine grape	cytosol	43.75	52.03
VIT_16s0050g02410.t01	Wine grape	cytosol	43.75	52.03
VIT_08s0040g00040.t01	Wine grape	cytosol	43.18	51.35
VIT_15s0046g01400.t01	Wine grape	cytosol	43.18	51.35
VIT_19s0014g01460.t01	Wine grape	cytosol	31.25	35.48
VIT_12s0028g02220.t01	Wine grape	extracellular	34.09	32.61
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	26.14	30.26
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	25.57	29.61
VIT_01s0026g01770.t01	Wine grape	plastid	26.14	24.08
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	23.3	18.89

Protein Annotations

EntrezGene:104879594	MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	ProteinID:CCB43796	ProteinID:CCB43796.1	UniProt:F6GUK1
EMBL:FN594951	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010099	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00015C7DED	ArrayExpress:VIT_06s0004g00730	EnsemblPlantsGene:VIT_06s0004g00730	EnsemblPlants:VIT_06s0004g00730.t01
RefSeq:XP_010651368.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:855040..858488

Molecular Weight (calculated)

19000.5 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.206

Length

176 amino acids

Sequence
(BLAST)

001: MSMNSSVSGV GGSGSGGGGR CWPSTTSVSA SGKRIQKEMM ELNADPPDDC SAGPKGDNLY HWVSTLIGPS GTPYEGGIFF LDITFPSDYP FKPPKVVFKT
101: RIYHCNVDSA GNLSVDILKD SWSPALTISN VLLAIRSIFT KPDPYNALVP GIAHLYLADR SKHDEVATEW TLRFAR

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.