Factsheet for VIT_08s0032g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56939	Soybean	mitochondrion, nucleus	99.34	99.34
KRH63396	Soybean	mitochondrion, nucleus	99.34	99.34
KRH03443	Soybean	mitochondrion, nucleus	98.68	98.68
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	98.68	98.68
KRH69329	Soybean	mitochondrion	97.37	97.37
KRH74802	Soybean	mitochondrion	96.05	96.05
CDY03040	Canola	mitochondrion, nucleus	87.5	94.33
VIT_01s0026g01770.t01	Wine grape	plastid	99.34	79.06
VIT_02s0025g01050.t01	Wine grape	cytosol	42.76	43.92
VIT_16s0050g02410.t01	Wine grape	cytosol	42.76	43.92
VIT_08s0040g00040.t01	Wine grape	cytosol	42.76	43.92
VIT_15s0046g01400.t01	Wine grape	cytosol	42.76	43.92
VIT_19s0015g01190.t01	Wine grape	cytosol	42.11	43.24
VIT_06s0004g08200.t01	Wine grape	cytosol	42.11	43.24
VIT_03s0038g02390.t01	Wine grape	cytosol	42.11	43.24
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	59.21	41.47
VIT_19s0014g01460.t01	Wine grape	cytosol	37.5	36.77
VIT_12s0028g02220.t01	Wine grape	extracellular	37.5	30.98
VIT_06s0004g00730.t01	Wine grape	plastid	30.26	26.14

Protein Annotations

EntrezGene:100242801	wikigene:100242801	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	ProteinID:CCB61530	ProteinID:CCB61530.1
UniProt:F6I3M0	EMBL:FN596742	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016574
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161	GO:GO:0061630	InterPro:IPR000608
InterPro:IPR016135	EntrezGene:LOC100242801	wikigene:LOC100242801	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43898	PANTHER:PTHR43898:SF8	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC51742	TIGR:TC51948
TIGR:TC52719	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00015CA5FD	ArrayExpress:VIT_08s0032g00310
EnsemblPlantsGene:VIT_08s0032g00310	EnsemblPlants:VIT_08s0032g00310.t01	unigene:Vvi.280	RefSeq:XP_002265323	RefSeq:XP_002265323.1	:

Description

No Description!

Coordinates

chr8:+:3378230..3385587

Molecular Weight (calculated)

17379.6 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.559

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFM EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRR VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.