Factsheet for VIT_03s0038g02390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g00870.t01
VIT_05s0020g02680.t01
VIT_07s0005g00420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	VIT_07s0005g00420.t01	AT2G47700.1	21798944
AT2G16740.1	VIT_04s0044g00870.t01	AT3G18710.1	21798944
AT2G16740.1	VIT_05s0020g02680.t01	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24311	Soybean	cytosol	97.3	97.3
KRH29288	Soybean	cytosol	97.3	97.3
VIT_16s0050g02410.t01	Wine grape	cytosol	92.57	92.57
VIT_15s0046g01400.t01	Wine grape	cytosol	92.57	92.57
VIT_08s0040g00040.t01	Wine grape	cytosol	92.57	92.57
VIT_02s0025g01050.t01	Wine grape	cytosol	92.57	92.57
VIT_06s0004g08200.t01	Wine grape	cytosol	91.89	91.89
Solyc02g083570.2.1	Tomato	cytosol	91.89	91.89
PGSC0003DMT400009229	Potato	nucleus	91.89	91.89
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	91.22	91.22
Os02t0120600-01	Rice	cytosol	91.22	91.22
KXG29317	Sorghum	nucleus	89.86	89.86
TraesCS6D01G069000.1	Wheat	cytosol	89.86	89.26
TraesCS6A01G071100.1	Wheat	cytosol	89.86	89.26
TraesCS6B01G095200.1	Wheat	cytosol	89.86	89.26
VIT_19s0015g01190.t01	Wine grape	cytosol	89.19	89.19
Zm00001d053897_P001	Maize	mitochondrion	87.84	87.84
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	87.84	87.84
AT2G16740.1	Thale cress	cytosol	87.16	87.16
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	87.16	87.16
GSMUA_Achr7P17820_001	Banana	cytosol	86.49	86.49
CDX71304	Canola	cytosol, mitochondrion, nucleus	85.14	85.14
CDY31408	Canola	cytosol	84.46	84.46
CDY02238	Canola	cytosol	80.41	80.41
Bra013049.1-P	Field mustard	cytosol	80.41	80.41
CDX89747	Canola	cytosol	79.73	79.73
Bra001995.1-P	Field mustard	cytosol	83.11	68.33
VIT_06s0004g00730.t01	Wine grape	plastid	52.03	43.75
VIT_19s0014g01460.t01	Wine grape	cytosol	44.59	42.58
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	43.24	42.11
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	42.57	41.45
VIT_12s0028g02220.t01	Wine grape	extracellular	48.65	39.13
VIT_01s0026g01770.t01	Wine grape	plastid	43.24	33.51
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	31.76	21.66

Protein Annotations

EntrezGene:100248604	wikigene:100248604	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:A5AP73	EMBL:AM431253
ProteinID:CAN73628	ProteinID:CAN73628.1	ProteinID:CBI37874	ProteinID:CBI37874.3	EMBL:FN596508	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	EntrezGene:LOC100248604	wikigene:LOC100248604	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF47	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC52959	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000151F02C	ArrayExpress:VIT_03s0038g02390	EnsemblPlantsGene:VIT_03s0038g02390	EnsemblPlants:VIT_03s0038g02390.t01
unigene:Vvi.11005	unigene:Vvi.9755	RefSeq:XP_002278689	RefSeq:XP_002278689.1	:	:

Description

No Description!

Coordinates

chr3:+:1661201..1662428

Molecular Weight (calculated)

16496.9 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.269

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIVKEL KDLQRDPPTS CSAGPVAEDM FHWQATIIGP NDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGNICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHLCKTD KVKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.