Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29288 | Soybean | cytosol | 98.65 | 98.65 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 97.3 | 97.3 |
| KRH15985 | Soybean | cytosol | 94.59 | 94.59 |
| KRH53428 | Soybean | cytosol | 94.59 | 94.59 |
| KRH64511 | Soybean | cytosol | 94.59 | 94.59 |
| KRH40705 | Soybean | cytosol | 93.92 | 93.92 |
| KRH68874 | Soybean | cytosol | 93.92 | 93.92 |
| KRH18135 | Soybean | cytosol | 93.92 | 93.29 |
| KRH17206 | Soybean | cytosol | 93.24 | 93.24 |
| KRH72837 | Soybean | cytosol | 93.24 | 93.24 |
| PGSC0003DMT400009229 | Potato | nucleus | 93.24 | 93.24 |
| Solyc02g083570.2.1 | Tomato | cytosol | 92.57 | 92.57 |
| KRG98118 | Soybean | cytosol | 91.89 | 91.89 |
| KRH30665 | Soybean | cytosol | 91.89 | 91.89 |
| Os02t0120600-01 | Rice | cytosol | 91.22 | 91.22 |
| GSMUA_Achr3P26650_001 | Banana | cytosol, mitochondrion, peroxisome | 90.54 | 90.54 |
| KRH33057 | Soybean | cytosol, nucleus, peroxisome | 90.54 | 90.54 |
| KXG29317 | Sorghum | nucleus | 89.86 | 89.86 |
| KRH45376 | Soybean | cytosol | 89.19 | 89.19 |
| TraesCS6A01G071100.1 | Wheat | cytosol | 89.19 | 88.59 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 89.19 | 88.59 |
| TraesCS6D01G069000.1 | Wheat | cytosol | 89.19 | 88.59 |
| KRH00486 | Soybean | cytosol | 93.92 | 87.97 |
| Zm00001d053897_P001 | Maize | mitochondrion | 87.84 | 87.84 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 87.84 | 87.84 |
| AT2G16740.1 | Thale cress | cytosol | 87.84 | 87.84 |
| GSMUA_Achr7P17820_001 | Banana | cytosol | 87.16 | 87.16 |
| PGSC0003DMT400058107 | Potato | cytosol, mitochondrion | 87.16 | 87.16 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 86.49 | 86.49 |
| CDY31408 | Canola | cytosol | 85.81 | 85.81 |
| KRH07669 | Soybean | cytosol, nucleus, peroxisome | 85.14 | 85.14 |
| CDY02238 | Canola | cytosol | 81.76 | 81.76 |
| Bra013049.1-P | Field mustard | cytosol | 81.76 | 81.76 |
| CDX89747 | Canola | cytosol | 81.08 | 81.08 |
| KRH07671 | Soybean | cytosol | 50.68 | 77.32 |
| Bra001995.1-P | Field mustard | cytosol | 84.46 | 69.44 |
| KRG89662 | Soybean | endoplasmic reticulum | 58.78 | 52.1 |
| KRH55097 | Soybean | endoplasmic reticulum | 48.65 | 47.06 |
| KRH26227 | Soybean | cytosol | 48.65 | 47.06 |
| KRH21984 | Soybean | endoplasmic reticulum, nucleus | 47.97 | 46.41 |
| KRH54510 | Soybean | cytosol, nucleus, plastid | 35.81 | 45.69 |
| KRH69329 | Soybean | mitochondrion | 43.92 | 42.76 |
| KRH63396 | Soybean | mitochondrion, nucleus | 43.92 | 42.76 |
| KRH56939 | Soybean | mitochondrion, nucleus | 43.92 | 42.76 |
| KRH45858 | Soybean | mitochondrion, nucleus | 43.92 | 42.76 |
| KRH74802 | Soybean | mitochondrion | 43.24 | 42.11 |
| KRH03443 | Soybean | mitochondrion, nucleus | 43.24 | 42.11 |
| KRH42820 | Soybean | plastid | 47.97 | 40.34 |
| KRG99148 | Soybean | mitochondrion | 33.11 | 37.4 |
| KRH27335 | Soybean | endoplasmic reticulum | 36.49 | 35.76 |
Protein Annotations
| EntrezGene:100787053 | MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EMBL:ACUP02007174 | EnsemblPlantsGene:GLYMA_12G032800 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | UniProt:I1LPS4 |
| InterPro:IPR000608 | InterPro:IPR016135 | EnsemblPlants:KRH24311 | ProteinID:KRH24311 | ProteinID:KRH24311.1 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF47 | MetaCyc:PWY-7511 | SMART:SM00212 |
| SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000233CA50 | : |
Description
hypothetical protein
Coordinates
chr12:+:2479542..2481426
Molecular Weight (calculated)
16498.9 Da
IEP (calculated)
7.963
GRAVY (calculated)
-0.282
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQRDPPTS CSAGPVGEDM FHWQATIIGP NDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGNICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMCKTD KVKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMCKTD KVKYESTARS WTQKYAMG
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.