CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH07289
KRH11911
KRH18976
KRH36952
KRH66280
KRH66282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	KRH11911	AT3G12470.1	21798944
AT5G19080.1	KRH36952	AT3G12470.1	21798944
AT5G19080.1	KRH02920	AT4G25760.1	22291198
AT5G19080.1	KRH18976	AT4G25760.1	22291198
AT5G19080.1	KRH07289	AT5G48385.1	21798944
AT5G19080.1	KRH66280	AT5G48385.1	21798944
AT5G19080.1	KRH66282	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02118	Soybean	cytosol, mitochondrion	64.29	78.26
KRH11381	Soybean	mitochondrion	68.15	61.39
CDY13950	Canola	cytosol	17.86	60.61
KRH20904	Soybean	mitochondrion	65.48	59.3
Solyc01g080080.2.1	Tomato	nucleus	26.79	57.69
CDY13958	Canola	cytosol	32.74	57.29
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	34.52	56.31
TraesCS1B01G258900.1	Wheat	cytosol	37.5	55.26
GSMUA_Achr3P09070_001	Banana	cytosol	43.15	52.73
VIT_05s0020g02680.t01	Wine grape	mitochondrion	59.52	51.02
Bra020773.1-P	Field mustard	mitochondrion	53.87	49.86
AT3G06140.1	Thale cress	mitochondrion	52.98	49.58
CDY24715	Canola	mitochondrion	53.27	49.31
CDY05235	Canola	mitochondrion	53.27	49.04
PGSC0003DMT400073576	Potato	plastid	54.46	47.53
CDX92559	Canola	mitochondrion	50.89	45.97
Bra002208.1-P	Field mustard	mitochondrion, nucleus	50.89	45.72
EES19487	Sorghum	nucleus	45.54	45.0
AT5G19080.1	Thale cress	cytosol	50.3	44.71
CDY13949	Canola	mitochondrion	51.19	44.56
Os05t0397650-00	Rice	nucleus	46.73	44.23
KRH19856	Soybean	nucleus	45.54	43.84
Zm00001d038127_P001	Maize	nucleus	43.75	43.75
KRH32464	Soybean	plastid	44.64	42.98
KRH22903	Soybean	mitochondrion, nucleus	35.42	38.51
KRH67682	Soybean	nucleus	38.39	37.83
KRG95976	Soybean	plastid	40.18	36.89
KRH05126	Soybean	cytosol	10.12	35.05

Protein Annotations

EMBL:ACUP02004727	EnsemblPlants:KRH51029	EnsemblPlantsGene:GLYMA_07G257200	EntrezGene:102665712	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH51029	ProteinID:KRH51029.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00023C65E6	UniProt:I1KN91	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43324443..43327039

Molecular Weight (calculated)

37754.9 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.400

Length

336 amino acids

Sequence
(BLAST)

001: MGISWSNSNS NRRRRRINTY FHPPHLPPPY YYHPPPPPPP PPQGYFIAST NPYASTTGYV GPPPTQYYPN GVNSVMLHQQ PLASGILASP PPYVDHQATK
101: KIRNDVNLHK HTLRLHLDPN NSDHHLISFD FDALYDGSIT IFYLAKEEEK CRFIPLFPDV FEPITFPFQK GAGQKFCQPS GTGIDLGFFE LDDLSLPSPE
201: EDVFPLVICA ETTSNSVIDA SPHMQITQAV LEKSNGIGPF QVKVVRQILW IDDIRYELRE LYGIGSSTVA DFDDNDPGKE CVICMTEPKD TAVLPCRHMC
301: MCGDCAKALR LQSNKCPICR QPIEELIEIK INNGNE

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.