CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85335
CDX86307
CDX92732
CDX94417
CDY00062
CDY00066
CDY05684
CDY48750
CDY68098
CDY72356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	CDX92732	AT4G25760.1	22291198
AT5G19080.1	CDX94417	AT4G25760.1	22291198
AT5G19080.1	CDY68098	AT4G25760.1	22291198
AT5G19080.1	CDY72356	AT4G25760.1	22291198
AT5G19080.1	CDX85335	AT5G48385.1	21798944
AT5G19080.1	CDX86307	AT5G48385.1	21798944
AT5G19080.1	CDY00062	AT5G48385.1	21798944
AT5G19080.1	CDY00066	AT5G48385.1	21798944
AT5G19080.1	CDY05684	AT5G48385.1	21798944
AT5G19080.1	CDY48750	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13950	Canola	cytosol	50.52	97.98
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	56.77	52.91
CDX70325	Canola	cytosol	27.6	51.46
CDX92559	Canola	mitochondrion	94.27	48.66
CDY13949	Canola	mitochondrion	97.4	48.45
TraesCS1B01G258900.1	Wheat	cytosol	57.29	48.25
Solyc01g080080.2.1	Tomato	nucleus	37.5	46.15
AT5G19080.1	Thale cress	cytosol	77.6	39.42
CDY24715	Canola	mitochondrion	67.71	35.81
CDY05235	Canola	mitochondrion	66.67	35.07
GSMUA_Achr3P09070_001	Banana	cytosol	47.92	33.45
Zm00001d038127_P001	Maize	nucleus	57.81	33.04
EES19487	Sorghum	nucleus	58.33	32.94
KRH51029	Soybean	mitochondrion	57.29	32.74
CDY41587	Canola	cytosol	46.35	32.36
KRH02118	Soybean	cytosol, mitochondrion	43.75	30.43
KRH11381	Soybean	mitochondrion	58.33	30.03
KRH20904	Soybean	mitochondrion	57.29	29.65
CDY67386	Canola	cytosol	44.27	29.41
Os05t0397650-00	Rice	nucleus	54.17	29.3
PGSC0003DMT400073576	Potato	plastid	57.29	28.57
CDY13299	Canola	cytosol	43.75	28.57
VIT_05s0020g02680.t01	Wine grape	mitochondrion	56.25	27.55
CDY44348	Canola	cytosol	36.98	27.0
CDY62899	Canola	cytosol	36.98	26.69
CDY10400	Canola	cytosol	38.02	24.5
CDY41312	Canola	plastid	45.83	23.66
CDY22203	Canola	mitochondrion, plastid	45.83	23.66
CDY44729	Canola	plastid	45.31	22.36
CDX70324	Canola	cytosol	8.85	10.12

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FNN1	UniProt:A0A078FNN1	EnsemblPlants:CDY13958	ProteinID:CDY13958
ProteinID:CDY13958.1	InterPro:E3ligase_BOI_like	EnsemblPlantsGene:GSBRNA2T00078456001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920
PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0004EC48BC	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

BnaC09g38680DBnaC09g38680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNN1]

Coordinates

chrLK032039:+:456049..456712

Molecular Weight (calculated)

21287.3 Da

IEP (calculated)

4.338

GRAVY (calculated)

-0.302

Length

192 amino acids

Sequence
(BLAST)

001: MVPQFPEAFK PTQVPFQKGT AQKFVQPSGT GTDLGFFSLD DLSNPLPDEV YPLVISAETV ISPSSGSEEP LVHKQITLAC LEKTDDGSFK VKVMKQILWI
101: EGARYELREL YGIDNSTAQD DDVASGLEDS GDKECVICLT EPKDTAVMPC RHLCLCSDCA KELRFQSNKC PICRQPIDEL LMIKVETSNE QH

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.