Factsheet for Zm00001d038127_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005107_P001
Zm00001d015470_P001
Zm00001d018645_P001
Zm00001d019890_P001
Zm00001d019892_P001
Zm00001d024198_P001
Zm00001d032115_P001
Zm00001d036703_P001
Zm00001d046927_P001
Zm00001d050079_P001
Zm00001d053729_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	Zm00001d018645_P001	AT3G12470.1	21798944
AT5G19080.1	Zm00001d015470_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d024198_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d032115_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d036703_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d046927_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d050079_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d053729_P001	AT4G25760.1	22291198
AT5G19080.1	Zm00001d005107_P001	AT5G48385.1	21798944
AT5G19080.1	Zm00001d019890_P001	AT5G48385.1	21798944
AT5G19080.1	Zm00001d019892_P001	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19487	Sorghum	nucleus	92.26	91.18
TraesCS1B01G258900.1	Wheat	cytosol	54.17	79.82
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	48.51	79.13
Os05t0397650-00	Rice	nucleus	76.79	72.68
CDY13950	Canola	cytosol	19.35	65.66
CDY13958	Canola	cytosol	33.04	57.81
GSMUA_Achr3P09070_001	Banana	cytosol	46.43	56.73
Solyc01g080080.2.1	Tomato	nucleus	21.73	46.79
CDX92559	Canola	mitochondrion	50.89	45.97
Zm00001d015671_P001	Maize	cytosol	30.65	45.78
Bra002208.1-P	Field mustard	mitochondrion, nucleus	50.89	45.72
CDY13949	Canola	mitochondrion	52.08	45.34
KRH51029	Soybean	mitochondrion	43.75	43.75
KRH20904	Soybean	mitochondrion	47.62	43.13
VIT_05s0020g02680.t01	Wine grape	mitochondrion	50.0	42.86
KRH11381	Soybean	mitochondrion	47.32	42.63
AT5G19080.1	Thale cress	cytosol	47.62	42.33
AT3G06140.1	Thale cress	mitochondrion	44.94	42.06
Bra020773.1-P	Field mustard	mitochondrion	44.94	41.6
CDY24715	Canola	mitochondrion	44.64	41.32
KRH02118	Soybean	cytosol, mitochondrion	33.93	41.3
CDY05235	Canola	mitochondrion	44.64	41.1
PGSC0003DMT400073576	Potato	plastid	46.73	40.78
Solyc01g098750.2.1	Tomato	plastid	45.83	39.9
Zm00001d028475_P002	Maize	cytosol	44.05	37.0
VIT_14s0128g00180.t01	Wine grape	mitochondrion	47.62	35.96

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6M3I8	ProteinID:AQK85721.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996
PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0008434C3D	EnsemblPlantsGene:Zm00001d038127	EnsemblPlants:Zm00001d038127_P001
EnsemblPlants:Zm00001d038127_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Probable E3 ubiquitin-protein ligase LUL4

Coordinates

chr6:-:148802708..148805989

Molecular Weight (calculated)

37342.1 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.620

Length

336 amino acids

Sequence
(BLAST)

001: MGASSSRRRR DDYYPPPHHY PPPPPPHHHH HPPPPPPPHH RPPPPPPPSS YYYHPHPPPP HAYHGPWHPA PAPPPQQPQP TALTGPPPEF VEHQQAQKVK
101: NYVNLHKDTI RLVPDGADPE RRLVAFTFDA ITDGSVTIYY FATEGKDCSF SSVYPELQTP TKIPFEKGLA QRFIQPSGSG VDLGFFSLDE LSSSSGEVFP
201: LVVYAEAYPS PEEGGPSVNA TRAQITLAVL EKHNNDLQVK VMKQILWIDG VRYELQEIFG LVNSTEADVA DADADDTGKE CVICLSEPRD TAVMPCRHLC
301: LCSECAKTLR FQSNKCPICR QPVEKLMEIK VRSPGP

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.