Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70325 | Canola | cytosol | 29.33 | 64.08 |
| Zm00001d028475_P002 | Maize | cytosol | 97.78 | 55.0 |
| KRH05126 | Soybean | cytosol | 23.56 | 54.64 |
| EER92535 | Sorghum | nucleus | 93.33 | 52.24 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 70.22 | 51.47 |
| CDY41587 | Canola | cytosol | 62.67 | 51.27 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 67.11 | 49.35 |
| GSMUA_Achr11P... | Banana | cytosol | 62.22 | 47.3 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 82.67 | 45.93 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 82.22 | 45.68 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 82.22 | 45.68 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 82.22 | 43.63 |
| AT3G53410.1 | Thale cress | cytosol | 55.56 | 41.81 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 58.22 | 41.32 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 66.22 | 41.16 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 58.22 | 41.07 |
| KRH32464 | Soybean | plastid | 63.11 | 40.69 |
| KRH19856 | Soybean | nucleus | 63.11 | 40.69 |
| CDY67386 | Canola | cytosol | 52.0 | 40.48 |
| Bra003133.1-P | Field mustard | nucleus | 52.0 | 40.48 |
| CDY13299 | Canola | cytosol | 52.44 | 40.14 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 71.11 | 40.1 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 84.89 | 39.71 |
| PGSC0003DMT400004461 | Potato | plastid | 64.0 | 39.67 |
| Solyc09g007700.2.1 | Tomato | plastid | 63.56 | 39.5 |
| Solyc10g086080.1.1 | Tomato | nucleus | 58.22 | 39.1 |
| CDY44348 | Canola | cytosol | 45.33 | 38.78 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 60.0 | 38.68 |
| PGSC0003DMT400045328 | Potato | plastid | 60.0 | 38.57 |
| KRH22903 | Soybean | mitochondrion, nucleus | 52.89 | 38.51 |
| Bra028846.1-P | Field mustard | cytosol | 44.89 | 37.97 |
| CDY62899 | Canola | cytosol | 44.89 | 37.97 |
| KRG95976 | Soybean | plastid | 61.33 | 37.7 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 63.56 | 37.53 |
| CDY44729 | Canola | plastid | 63.11 | 36.5 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 59.56 | 36.12 |
| KRH67682 | Soybean | nucleus | 54.67 | 36.07 |
| AT3G09770.1 | Thale cress | plastid | 61.78 | 35.82 |
| CDY22203 | Canola | mitochondrion, plastid | 59.11 | 35.75 |
| CDY41312 | Canola | plastid | 59.11 | 35.75 |
| CDY10400 | Canola | cytosol | 46.67 | 35.23 |
| AT5G03200.1 | Thale cress | mitochondrion | 51.56 | 34.42 |
| Bra009546.1-P | Field mustard | cytosol | 45.33 | 34.34 |
| Solyc04g054680.1.1 | Tomato | cytosol | 48.89 | 30.73 |
| Zm00001d038127_P001 | Maize | nucleus | 45.78 | 30.65 |
| Solyc04g054650.1.1 | Tomato | cytosol | 52.89 | 24.49 |
| CDX70324 | Canola | cytosol | 13.78 | 18.45 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6H361 | ProteinID:AQK69273.1 | InterPro:E3ligase_BOI_like | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 |
| PFscan:PS50089 | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0008459579 |
| EnsemblPlantsGene:Zm00001d015671 | EnsemblPlants:Zm00001d015671_P001 | EnsemblPlants:Zm00001d015671_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Homeobox-transcription factor 27Probable E3 ubiquitin-protein ligase LOG2
Coordinates
chr5:-:105092463..105093878
Molecular Weight (calculated)
25273.2 Da
IEP (calculated)
4.547
GRAVY (calculated)
-0.501
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVYLFAKEE LNCNLTAVKE NLMKPVTVSF KEGLGQKFRQ PSGTGIDFSV FEESDLLKQG DMDVYPLAVK AETALPVDQP PEGDDQKMKT PNSQITQAVF
101: EKKENGDYHV RVVCQILWVN GTRYELQEIY GIGNSVEGDA DANDPGKECV ICLSEPRDTT VLPCRHMCMC SECAKVLRYQ TTRCPICRQP VERLLEIKVN
201: NKSEDQQQMP QSPPLPALAP QQEEV
101: EKKENGDYHV RVVCQILWVN GTRYELQEIY GIGNSVEGDA DANDPGKECV ICLSEPRDTT VLPCRHMCMC SECAKVLRYQ TTRCPICRQP VERLLEIKVN
201: NKSEDQQQMP QSPPLPALAP QQEEV
001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
Arabidopsis Description
LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.