Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G220700.1 | Wheat | cytosol | 99.01 | 99.01 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 98.77 | 98.77 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 93.09 | 88.92 |
| EER92535 | Sorghum | nucleus | 82.72 | 83.33 |
| Zm00001d015671_P001 | Maize | cytosol | 45.68 | 82.22 |
| Zm00001d028475_P002 | Maize | cytosol | 80.49 | 81.5 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 52.35 | 69.06 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 51.6 | 68.3 |
| GSMUA_Achr11P... | Banana | cytosol | 49.63 | 67.91 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 60.25 | 67.4 |
| PGSC0003DMT400004461 | Potato | plastid | 60.0 | 66.94 |
| Solyc09g007700.2.1 | Tomato | plastid | 59.75 | 66.85 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 77.28 | 65.07 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 63.7 | 64.66 |
| CDY41587 | Canola | cytosol | 43.7 | 64.36 |
| CDX70325 | Canola | cytosol | 16.3 | 64.08 |
| KRH32464 | Soybean | plastid | 55.06 | 63.9 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 49.63 | 63.41 |
| KRH19856 | Soybean | nucleus | 54.57 | 63.32 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 49.88 | 63.32 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 52.84 | 61.32 |
| Solyc10g086080.1.1 | Tomato | nucleus | 50.62 | 61.19 |
| PGSC0003DMT400045328 | Potato | plastid | 51.85 | 60.0 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 55.06 | 58.53 |
| AT3G09770.1 | Thale cress | plastid | 55.8 | 58.25 |
| CDY41312 | Canola | plastid | 53.09 | 57.8 |
| CDY44729 | Canola | plastid | 55.31 | 57.58 |
| CDY22203 | Canola | mitochondrion, plastid | 52.84 | 57.53 |
| AT3G53410.1 | Thale cress | cytosol | 42.47 | 57.53 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 52.59 | 57.41 |
| KRG95976 | Soybean | plastid | 51.36 | 56.83 |
| CDY67386 | Canola | cytosol | 40.0 | 56.06 |
| Bra003133.1-P | Field mustard | nucleus | 40.0 | 56.06 |
| KRH67682 | Soybean | nucleus | 47.16 | 56.01 |
| CDY13299 | Canola | cytosol | 39.75 | 54.76 |
| Bra009546.1-P | Field mustard | cytosol | 38.77 | 52.86 |
| KRH22903 | Soybean | mitochondrion, nucleus | 40.0 | 52.43 |
| CDY44348 | Canola | cytosol | 33.58 | 51.71 |
| CDY10400 | Canola | cytosol | 38.02 | 51.68 |
| KRH05126 | Soybean | cytosol | 12.35 | 51.55 |
| CDX70324 | Canola | cytosol | 21.23 | 51.19 |
| Bra028846.1-P | Field mustard | cytosol | 33.58 | 51.13 |
| CDY62899 | Canola | cytosol | 33.58 | 51.13 |
| AT5G03200.1 | Thale cress | mitochondrion | 42.47 | 51.04 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 37.53 | 50.16 |
| Solyc04g054680.1.1 | Tomato | cytosol | 31.85 | 36.03 |
| Solyc04g054650.1.1 | Tomato | cytosol | 33.58 | 27.98 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G083500.1 | EnsemblPlantsGene:TraesCS4A01G083500 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16789 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:87412369..87415302
Molecular Weight (calculated)
44699.7 Da
IEP (calculated)
6.558
GRAVY (calculated)
-0.716
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAGSNGGG GGPGHRRRSS GHGHGHHHQA PPPPQQPEAA PNRYVFAAAT PYPPQYPNPN PPQYYPQYGN YYPPPPPSVQ VPLPAPYDHH HRGAAPPPNV
101: PPTEFPPSVH SHHYPGWAGR YPYGLQPPMP TPYVEHQKAV TIRNDVNLKK ETLRIELDEG CPGRFLVAFT FDATVAGSMT VYFFAKEELN CNLTAMKPDL
201: IKPVTVSFKE GLGQKFRQPS GTGIDFSAFE DSELLKQGGM EIYPLAVKAE TTLAADQPSE GEDQKPKTPN SQITQAVFEK KESGDYQVRV VSQILWVNGT
301: RYELQEIYGI GNSVEGDTDA NDPGKECVIC LSEPRDTTVL PCRHMCMCSE CAKVLRYQTT RCPICRQPVE RLLEIKVNNK AEEPPQQTSQ SPPLPPPPAL
401: HQEEM
101: PPTEFPPSVH SHHYPGWAGR YPYGLQPPMP TPYVEHQKAV TIRNDVNLKK ETLRIELDEG CPGRFLVAFT FDATVAGSMT VYFFAKEELN CNLTAMKPDL
201: IKPVTVSFKE GLGQKFRQPS GTGIDFSAFE DSELLKQGGM EIYPLAVKAE TTLAADQPSE GEDQKPKTPN SQITQAVFEK KESGDYQVRV VSQILWVNGT
301: RYELQEIYGI GNSVEGDTDA NDPGKECVIC LSEPRDTTVL PCRHMCMCSE CAKVLRYQTT RCPICRQPVE RLLEIKVNNK AEEPPQQTSQ SPPLPPPPAL
401: HQEEM
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.