Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 2
- golgi 1
- plasma membrane 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 77.91 | 80.24 |
| TraesCS6D01G140800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 74.42 | 75.29 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 65.7 | 61.08 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 22.67 | 38.61 |
| Zm00001d053729_P001 | Maize | plastid | 31.4 | 37.24 |
| AT4G25760.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 27.33 | 36.43 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.72 | 36.02 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 41.86 | 35.64 |
| CDY13451 | Canola | plasma membrane | 26.74 | 35.38 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 41.28 | 34.98 |
| Bra013917.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 27.91 | 34.78 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 27.91 | 34.78 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 27.91 | 34.78 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 43.6 | 34.72 |
| Bra019142.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 26.74 | 33.33 |
| CDX92732 | Canola | plasma membrane | 26.16 | 33.33 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 26.74 | 33.33 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 34.88 | 32.97 |
| Zm00001d015470_P001 | Maize | plastid | 37.21 | 32.82 |
| AT2G24762.1 | Thale cress | golgi, plasma membrane, plastid | 29.65 | 32.69 |
| Bra002705.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 27.91 | 32.65 |
| Bra002707.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 27.91 | 32.65 |
| CDX68780 | Canola | mitochondrion | 31.4 | 32.53 |
| KRH02920 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 30.81 | 32.32 |
| Bra006808.1-P | Field mustard | plasma membrane | 27.33 | 32.19 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 31.98 | 32.16 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 41.86 | 31.72 |
| AT4G31730.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 29.07 | 31.65 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 32.56 | 31.46 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 27.33 | 31.33 |
| Bra011294.1-P | Field mustard | mitochondrion | 30.23 | 31.33 |
| Bra020422.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 26.74 | 31.08 |
| Bra023987.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 29.07 | 30.49 |
| AT5G57685.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 26.16 | 30.41 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 28.49 | 29.88 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 26.16 | 29.8 |
| Bra007834.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 25.58 | 29.33 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 44.19 | 28.9 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 24.42 | 28.0 |
| Solyc12g096480.1.1 | Tomato | plastid | 24.42 | 27.63 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 26.16 | 27.44 |
| PGSC0003DMT400075274 | Potato | plastid | 25.0 | 27.39 |
| KRH18976 | Soybean | plasma membrane | 29.65 | 21.79 |
| Bra020423.1-P | Field mustard | cytosol | 13.37 | 21.1 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G178900.1 | EnsemblPlantsGene:TraesCS6B01G178900 | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF17 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:198977601..198978119
Molecular Weight (calculated)
17350.2 Da
IEP (calculated)
4.480
GRAVY (calculated)
-0.153
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPGAEYPMA HGPAAAAPRS TWQTPVPYLF GGLATMLALI ALSLLTLACS YWKLSGGLAG PDEDQPAGPD GEKGSAAGPA REWLGHVVVI MAGDEQPSFL
101: ATPASMTSRA ADGGAETAAG ATACCAACRS EERKIADARE AGARPAGSED DAQRQSPSEL ASSSTSSSVI SS
101: ATPASMTSRA ADGGAETAAG ATACCAACRS EERKIADARE AGARPAGSED DAQRQSPSEL ASSSTSSSVI SS
001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
Arabidopsis Description
GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.