Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 6
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
24351685
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400004461 | |
| PGSC0003DMT400027153 | |
| PGSC0003DMT400045328 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24920.1 | PGSC0003DMT400004461 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400027153 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400045328 | AT3G09770.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 75.27 | 76.97 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 37.91 | 45.7 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 42.86 | 45.61 |
| AT5G24920.1 | Thale cress | golgi, plasma membrane, plastid | 31.32 | 43.51 |
| Zm00001d036703_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 34.07 | 42.76 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 34.62 | 41.45 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 21.98 | 39.6 |
| GSMUA_Achr1P23400_001 | Banana | cytosol, mitochondrion, plasma membrane | 34.07 | 39.49 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane, plastid | 35.71 | 38.69 |
| CDX80475 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 29.12 | 38.69 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 34.07 | 38.04 |
| Bra009804.1-P | Field mustard | extracellular | 20.88 | 38.0 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 36.81 | 37.85 |
| PGSC0003DMT400075274 | Potato | plastid | 32.42 | 37.58 |
| PGSC0003DMT400003749 | Potato | plastid | 21.43 | 37.5 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 36.26 | 37.08 |
| Os06t0654400-00 | Rice | endoplasmic reticulum, nucleus, plasma membrane | 37.36 | 36.96 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 36.26 | 36.67 |
| PGSC0003DMT400003750 | Potato | plastid | 20.33 | 36.27 |
| TraesCS7A01G498100.1 | Wheat | endoplasmic reticulum | 37.36 | 35.98 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.97 | 35.93 |
| TraesCS4A01G234200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.52 | 35.88 |
| GSMUA_Achr7P05080_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 29.12 | 35.57 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.32 | 35.4 |
| HORVU7Hr1G111310.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 35.16 | 35.36 |
| TraesCS6D01G140800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.97 | 35.29 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 39.01 | 34.98 |
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.97 | 34.88 |
| Zm00001d046927_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 35.16 | 34.78 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 35.16 | 34.59 |
| Zm00001d053729_P001 | Maize | plastid | 27.47 | 34.48 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 35.71 | 34.21 |
| EER88756 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 35.71 | 33.68 |
| PGSC0003DMT400003752 | Potato | plastid | 22.53 | 33.33 |
| TraesCS7D01G485400.1 | Wheat | golgi, mitochondrion, plasma membrane | 37.36 | 33.33 |
| PGSC0003DMT400075948 | Potato | plastid | 22.53 | 33.33 |
| PGSC0003DMT400070631 | Potato | nucleus | 35.16 | 33.16 |
| TraesCS7A01G497800.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 37.36 | 33.01 |
| EER90144 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 35.16 | 32.99 |
| TraesCS7D01G485100.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 36.81 | 32.84 |
| EES13610 | Sorghum | plastid | 32.42 | 32.6 |
| Zm00001d024198_P001 | Maize | plastid | 31.32 | 32.57 |
| KRH05332 | Soybean | plastid | 30.22 | 31.25 |
| TraesCS7A01G497900.1 | Wheat | endoplasmic reticulum | 36.81 | 31.02 |
| TraesCS7D01G485300.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 36.81 | 31.02 |
| HORVU1Hr1G003070.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 36.26 | 30.99 |
| HORVU7Hr1G111320.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 36.26 | 30.99 |
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 31.87 | 30.85 |
| HORVU1Hr1G003060.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 36.26 | 30.84 |
| HORVU7Hr1G111350.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 36.26 | 30.41 |
| HORVU1Hr1G003080.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 36.26 | 30.41 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 33.52 | 30.2 |
| TraesCS7A01G498000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 32.97 | 30.15 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 35.71 | 30.09 |
| KRH15701 | Soybean | plastid | 29.67 | 29.67 |
| TraesCS7D01G485200.1 | Wheat | vacuole | 34.62 | 29.58 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 36.26 | 29.07 |
| HORVU0Hr1G022370.1 | Barley | mitochondrion | 36.26 | 26.72 |
| Zm00001d015470_P001 | Maize | plastid | 28.02 | 26.15 |
| Os08t0249200-00 | Rice | plastid | 28.02 | 25.89 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 35.16 | 24.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067619 | EnsemblPlantsGene:PGSC0003DMG400026291 | EntrezGene:102584769 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF5 | PGSC:PGSC0003DMG400026291 | RefSeq:XP_006357062.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00029556C5 | UniProt:M1CHK4 | MapMan:35.2 | : | : |
Description
GDU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026291]
Coordinates
chr8:+:2070008..2070990
Molecular Weight (calculated)
19955.8 Da
IEP (calculated)
4.951
GRAVY (calculated)
-0.292
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTAIGFSTI TSKFEQSKST VKATFSPPAM VQRSPWHSPV PYLFGGLAAM LGLIAFALLI LACSYWKLSG HLRENGEIDH DSEVDPESGD GEKPAIGIVK
101: AMPVFEEKIV VIMAGDLRPS FLATPVLSKN SVLGDGSDLN KFEKKLEKET EELGDEKEKE EVVIEVREMS HGESQNSHGQ NH
101: AMPVFEEKIV VIMAGDLRPS FLATPVLSKN SVLGDGSDLN KFEKKLEKET EELGDEKEKE EVVIEVREMS HGESQNSHGQ NH
001: MRPLSVQSKF EDVATSTSVN HHGVTPQSPW HSPVPYLFGG LAAMLGLIAF ALLILACSYW RLSSSGEEDG QNVDEEKESR SGDKAANGAY EEKFLVIMAG
101: EDLPRYLATP AMKKCTCGGH EGKMVISQEE SVAKEEEKMR EGEEEKVKDT GETTTTSH
101: EDLPRYLATP AMKKCTCGGH EGKMVISQEE SVAKEEEKMR EGEEEKVKDT GETTTTSH
Arabidopsis Description
GDU1Protein GLUTAMINE DUMPER 1 [Source:UniProtKB/Swiss-Prot;Acc:O81775]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.