Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 31.85 | 49.51 |
| GSMUA_Achr7P05080_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 46.5 | 48.99 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 42.68 | 44.08 |
| Bra002705.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 38.85 | 41.5 |
| Bra002707.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 38.85 | 41.5 |
| Bra006808.1-P | Field mustard | plasma membrane | 38.22 | 41.1 |
| AT4G25760.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 33.12 | 40.31 |
| Bra019142.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 35.03 | 39.86 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 35.03 | 39.86 |
| CDX92732 | Canola | plasma membrane | 33.76 | 39.26 |
| Bra020422.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 36.31 | 38.51 |
| Bra013917.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 33.76 | 38.41 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 33.76 | 38.41 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 33.76 | 38.41 |
| AT5G57685.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 35.67 | 37.84 |
| CDY13451 | Canola | plasma membrane | 31.21 | 37.69 |
| AT4G31730.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 36.94 | 36.71 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane, plastid | 38.85 | 36.31 |
| Bra007834.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 33.76 | 35.33 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 33.76 | 35.33 |
| Zm00001d024198_P001 | Maize | plastid | 38.85 | 34.86 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 33.12 | 34.67 |
| EES13610 | Sorghum | plastid | 39.49 | 34.25 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 35.67 | 34.15 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 39.49 | 34.07 |
| Bra011294.1-P | Field mustard | mitochondrion | 35.67 | 33.73 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 38.22 | 33.71 |
| Solyc12g096480.1.1 | Tomato | plastid | 32.48 | 33.55 |
| AT2G24762.1 | Thale cress | golgi, plasma membrane, plastid | 33.12 | 33.33 |
| Bra023987.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 34.39 | 32.93 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 31.21 | 32.45 |
| KRH02920 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 33.76 | 32.32 |
| CDX68780 | Canola | mitochondrion | 33.76 | 31.93 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 33.12 | 31.71 |
| Os08t0249200-00 | Rice | plastid | 39.49 | 31.47 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 33.76 | 30.99 |
| PGSC0003DMT400075274 | Potato | plastid | 29.94 | 29.94 |
| Bra020423.1-P | Field mustard | cytosol | 18.47 | 26.61 |
| KRH18976 | Soybean | plasma membrane | 33.76 | 22.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P23400_001 | EnsemblPlants:GSMUA_Achr1T23400_001 | EnsemblPlantsGene:GSMUA_Achr1G23400_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33228 | PANTHER:PTHR33228:SF17 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295C84A | UniProt:M0S2E7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G23400_001]
Coordinates
chr1:+:17757175..17757648
Molecular Weight (calculated)
16412.0 Da
IEP (calculated)
4.112
GRAVY (calculated)
-0.305
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTAAGFHET GGTIEAAAPS SAPGGPHSPW QSPVPYLFGG LAAMLGLIAL ALLILACSYW KLSGYLDPGN DDDDATTNSD HEKPADATAG KDPTFLDDRF
101: LVIMAGDHAP TFLAVPIAGR LADNTTTSAY GNLDEEDKQP EGAATPLPQS QSQTREQ
101: LVIMAGDHAP TFLAVPIAGR LADNTTTSAY GNLDEEDKQP EGAATPLPQS QSQTREQ
001: MEGRQYYPPR ENVEGNRTTM GGGPHSPWHS PVPYLFGGLA AMLGLIAFAL LILACSYWRL SGYLDGEENQ SRERDLEVGD VKPDKTAVKP VALPEKFLVI
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
Arabidopsis Description
GDU3Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.