Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P14690_001 | Banana | cytosol | 71.28 | 68.73 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 70.61 | 68.3 |
| CDX70325 | Canola | cytosol | 21.96 | 63.11 |
| Zm00001d015671_P001 | Maize | cytosol | 47.3 | 62.22 |
| CDY41587 | Canola | cytosol | 55.74 | 60.0 |
| KRH32464 | Soybean | plastid | 63.85 | 54.15 |
| KRH19856 | Soybean | nucleus | 63.51 | 53.87 |
| PGSC0003DMT400004461 | Potato | plastid | 65.2 | 53.17 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 64.86 | 53.04 |
| Solyc09g007700.2.1 | Tomato | plastid | 64.86 | 53.04 |
| Bra003133.1-P | Field mustard | nucleus | 51.69 | 52.94 |
| CDY67386 | Canola | cytosol | 51.69 | 52.94 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 49.32 | 52.9 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 56.76 | 52.66 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 56.08 | 52.37 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 70.27 | 52.13 |
| CDY13299 | Canola | cytosol | 51.69 | 52.04 |
| Solyc10g086080.1.1 | Tomato | nucleus | 58.45 | 51.64 |
| AT3G53410.1 | Thale cress | cytosol | 51.69 | 51.17 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 60.14 | 51.0 |
| Zm00001d028475_P002 | Maize | cytosol | 68.24 | 50.5 |
| PGSC0003DMT400045328 | Potato | plastid | 59.46 | 50.29 |
| EER92535 | Sorghum | nucleus | 68.24 | 50.25 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 68.58 | 50.12 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 68.24 | 49.88 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 67.91 | 49.63 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 50.68 | 49.51 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 50.34 | 49.17 |
| CDY44348 | Canola | cytosol | 42.91 | 48.29 |
| Os10t0204100-01 | Rice | nucleus | 68.24 | 47.53 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 67.91 | 47.41 |
| Os01t0374900-01 | Rice | plastid | 50.0 | 47.28 |
| Bra028846.1-P | Field mustard | cytosol | 42.23 | 46.99 |
| CDY62899 | Canola | cytosol | 42.23 | 46.99 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 60.47 | 46.98 |
| KRG95976 | Soybean | plastid | 57.77 | 46.72 |
| GSMUA_Achr3P09070_001 | Banana | cytosol | 43.24 | 46.55 |
| KRH67682 | Soybean | nucleus | 53.04 | 46.04 |
| CDY41312 | Canola | plastid | 57.77 | 45.97 |
| CDY22203 | Canola | mitochondrion, plastid | 57.77 | 45.97 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 57.43 | 45.82 |
| CDY44729 | Canola | plastid | 60.14 | 45.76 |
| CDY10400 | Canola | cytosol | 45.95 | 45.64 |
| KRH22903 | Soybean | mitochondrion, nucleus | 47.64 | 45.63 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 50.68 | 45.59 |
| KRH05126 | Soybean | cytosol | 14.86 | 45.36 |
| Bra009546.1-P | Field mustard | cytosol | 45.27 | 45.12 |
| AT3G09770.1 | Thale cress | plastid | 59.12 | 45.1 |
| AT5G03200.1 | Thale cress | mitochondrion | 48.31 | 42.43 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 66.22 | 40.75 |
| CDX70324 | Canola | cytosol | 21.62 | 38.1 |
| Solyc04g054680.1.1 | Tomato | cytosol | 37.5 | 31.01 |
| Solyc04g054650.1.1 | Tomato | cytosol | 40.2 | 24.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P00510_001 | EnsemblPlants:GSMUA_Achr11T00510_001 | EnsemblPlantsGene:GSMUA_Achr11G00510_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002966FDE | UniProt:M0RN82 | MapMan:35.1 |
Description
Putative E3 ubiquitin-protein ligase MGRN1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G00510_001]
Coordinates
chr11:+:304557..310397
Molecular Weight (calculated)
33374.7 Da
IEP (calculated)
6.241
GRAVY (calculated)
-0.495
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPLPAPFD HHQRREYPFH HPGWANGGRY PYGAPLPAPA PAPYVDHHKA VTIRNDVNIK KETLRVEPDE QNPGQFLVAF TFDATVAGSI TVFFFAKEGS
101: DCNLITVKEL LKPVTVPFKE GLGQKFRQPS GTGIDLFLVD EMELIKVGES NVYPLAVKAE ASPSSNQDFD EHQQVQSSDS QITQAIFEKK NNAGYDVRVT
201: KQILWVSGTR YELQEIYGIG NSVGGETDEN DSGKECVICL SEPRETTVLP CRHMCMCREC AKVLRFQTNR CPMCRQLVEQ LLEIKIHDRA EKRQER
101: DCNLITVKEL LKPVTVPFKE GLGQKFRQPS GTGIDLFLVD EMELIKVGES NVYPLAVKAE ASPSSNQDFD EHQQVQSSDS QITQAIFEKK NNAGYDVRVT
201: KQILWVSGTR YELQEIYGIG NSVGGETDEN DSGKECVICL SEPRETTVLP CRHMCMCREC AKVLRFQTNR CPMCRQLVEQ LLEIKIHDRA EKRQER
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.