Factsheet for Os03t0254900-02

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
plastid 2
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02
Os06t0654400-00
Os08t0249200-00
Os08t0446800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	Os06t0654400-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0249200-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0446800-01	AT2G24762.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G31730.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0249200-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0446800-01	AT4G31730.1	24036454
AT3G53410.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G53410.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G53410.1	Os06t0654400-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0249200-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0446800-01	AT5G57685.1	22291198
AT5G03200.1	Os06t0654400-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0249200-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0446800-01	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015671_P001	Maize	cytosol	39.71	84.89
TraesCS4D01G221000.1	Wheat	cytosol	65.28	77.53
TraesCS4B01G220700.1	Wheat	cytosol	65.07	77.28
TraesCS4A01G083500.1	Wheat	cytosol	65.07	77.28
EER92535	Sorghum	nucleus	63.62	76.12
Zm00001d028475_P002	Maize	cytosol	63.2	76.0
HORVU0Hr1G008700.4	Barley	cytosol	63.83	72.41
GSMUA_Achr5P14690_001	Banana	cytosol	44.91	70.36
Os10t0204100-01	Rice	nucleus	61.12	69.18
GSMUA_Achr7P01960_001	Banana	cytosol	42.83	67.32
GSMUA_Achr11P...	Banana	cytosol	40.75	66.22
VIT_08s0040g01940.t01	Wine grape	cytosol	48.65	64.64
PGSC0003DMT400004461	Potato	plastid	48.02	63.64
CDY41587	Canola	cytosol	36.38	63.64
Solyc09g007700.2.1	Tomato	plastid	47.82	63.54
CDX70325	Canola	cytosol	13.51	63.11
GSMUA_Achr2P12340_001	Banana	nucleus	51.56	62.16
KRH32464	Soybean	plastid	44.91	61.89
VIT_06s0004g02970.t01	Wine grape	mitochondrion	44.28	61.03
PGSC0003DMT400027153	Potato	nucleus, plastid	40.12	60.88
Solyc10g084100.1.1	Tomato	nucleus, plastid	40.33	60.81
KRH19856	Soybean	nucleus	44.07	60.74
Solyc10g086080.1.1	Tomato	nucleus	40.33	57.91
PGSC0003DMT400045328	Potato	plastid	41.58	57.14
AT3G09770.1	Thale cress	plastid	44.91	55.67
AT3G53410.1	Thale cress	cytosol	34.51	55.52
Bra029788.1-P	Field mustard	nucleus, plastid	43.66	55.12
CDY22203	Canola	mitochondrion, plastid	42.62	55.11
KRG95976	Soybean	plastid	41.79	54.92
CDY41312	Canola	plastid	42.41	54.84
Bra034086.1-P	Field mustard	nucleus, plastid	42.2	54.72
CDY67386	Canola	cytosol	32.64	54.33
Bra003133.1-P	Field mustard	nucleus	32.64	54.33
KRH67682	Soybean	nucleus	38.46	54.25
CDY44729	Canola	plastid	43.87	54.24
KRH22903	Soybean	mitochondrion, nucleus	34.1	53.07
CDY13299	Canola	cytosol	32.43	53.06
KRH05126	Soybean	cytosol	10.39	51.55
CDY44348	Canola	cytosol	28.07	51.33
Bra009546.1-P	Field mustard	cytosol	31.39	50.84
AT5G03200.1	Thale cress	mitochondrion	35.34	50.45
CDY10400	Canola	cytosol	31.18	50.34
CDY62899	Canola	cytosol	27.44	49.62
Bra028846.1-P	Field mustard	cytosol	27.44	49.62
CDX70324	Canola	cytosol	17.05	48.81
Os01t0374900-01	Rice	plastid	30.35	46.65
Os05t0397650-00	Rice	nucleus	32.02	43.38
Solyc04g054680.1.1	Tomato	cytosol	25.36	34.08
Solyc04g054650.1.1	Tomato	cytosol	27.23	26.95

Protein Annotations

EMBL:AK100160	EnsemblPlants:Os03t0254900-02	EnsemblPlantsGene:Os03g0254900	EntrezGene:4332287	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920
PFscan:PS50089	ProteinID:ABF95025.1	ProteinID:BAS83317.1	ProteinID:BAS83318.1	RefSeq:XP_015632385.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0000E11FDF	UniProt:A0A0P0VVJ6	MapMan:35.1	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0254900-01);Similar to zinc finger (C3HC4-type RING finger) family protein. (Os03t0254900-02)

Coordinates

chr3:-:8182277..8186633

Molecular Weight (calculated)

53534.2 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.633

Length

481 amino acids

Sequence
(BLAST)

001: ACGSPQPYSI REGGDRALLR CCRSLSLLVC DSRKSEVFFA SSIFFFLRYF FVSLNLESRR GGSPGHRRRG SAAQGHGHHQ VHGHHHQPSS PPPPPPPESS
101: PSHYVFAAAT PYPPPQYTNP NLPRYYPQYG NYYPPPPSLQ VPLPAPYDHH HRGGGAGVPA GGEFPPSAHP QHYPGWPGVS GRPHPCGLQP AMPTPYVEHQ
201: KAITIRNDVN LKKETLRIEP DEECPGRFLV AFTFDATLAG SMTVYFFAKE ELNCNLTAVK EDLIKPVTVS FKEGLGQKFR QPSGTGINFS VFEDSELLKQ
301: GDMDVYPLAV KAETTMPVDQ KLEGEDQKMK TPNSQITQAL FEKKESGDYQ VRVASQILWV NGTRYELQEI YGIGNSVEGD ADANDPGKEC VICLSEPRDT
401: TVLPCRHMCM CSECAKVLRY QTTRCPICRQ PVERLLEIKV NNKAEEQQQP SPDSPIKVNS KAEEHQQQPS QSLPIPHREE V

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.