Factsheet for Bra009546.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009804.1-P
Bra011294.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03200.1	Bra011294.1-P	AT4G31730.1	22291198
AT5G03200.1	Bra009804.1-P	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70325	Canola	cytosol	34.01	98.06
CDX70324	Canola	cytosol	50.17	88.69
Bra028846.1-P	Field mustard	cytosol	48.15	53.76
AT5G03200.1	Thale cress	mitochondrion	55.22	48.66
PGSC0003DMT400027153	Potato	nucleus, plastid	51.18	47.95
Solyc10g084100.1.1	Tomato	nucleus, plastid	50.84	47.34
Bra034086.1-P	Field mustard	nucleus, plastid	58.59	46.9
Bra029788.1-P	Field mustard	nucleus, plastid	59.26	46.19
Bra003133.1-P	Field mustard	nucleus	44.78	46.02
GSMUA_Achr7P01960_001	Banana	cytosol	46.8	45.42
Zm00001d015671_P001	Maize	cytosol	34.34	45.33
GSMUA_Achr5P14690_001	Banana	cytosol	46.8	45.28
GSMUA_Achr11P...	Banana	cytosol	45.12	45.27
KRH19856	Soybean	nucleus	52.86	44.99
KRH32464	Soybean	plastid	51.85	44.13
PGSC0003DMT400004461	Potato	plastid	53.87	44.08
Solyc09g007700.2.1	Tomato	plastid	52.86	43.37
KRH67682	Soybean	nucleus	49.49	43.11
PGSC0003DMT400045328	Potato	plastid	49.49	42.0
Solyc10g086080.1.1	Tomato	nucleus	47.14	41.79
VIT_08s0040g01940.t01	Wine grape	cytosol	50.84	41.71
TraesCS7B01G390000.1	Wheat	mitochondrion	38.38	41.3
KRG95976	Soybean	plastid	50.17	40.71
TraesCS7A01G486700.1	Wheat	cytosol	39.73	38.94
TraesCS4D01G221000.1	Wheat	cytosol	52.86	38.77
TraesCS4B01G220700.1	Wheat	cytosol	52.86	38.77
TraesCS4A01G083500.1	Wheat	cytosol	52.86	38.77
TraesCS7D01G473200.1	Wheat	cytosol	39.39	38.61
EER92535	Sorghum	nucleus	51.85	38.31
GSMUA_Achr2P12340_001	Banana	nucleus	51.18	38.1
Zm00001d028475_P002	Maize	cytosol	51.18	38.0
Os10t0204100-01	Rice	nucleus	53.2	37.18
Os01t0374900-01	Rice	plastid	39.06	37.06
HORVU0Hr1G008700.4	Barley	cytosol	50.84	35.61
HORVU7Hr1G109550.2	Barley	cytosol	38.38	34.65
KRH05126	Soybean	cytosol	11.11	34.02
Bra020773.1-P	Field mustard	mitochondrion	39.73	32.51
Bra002208.1-P	Field mustard	mitochondrion, nucleus	40.4	32.09
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	50.84	31.39
Solyc04g054680.1.1	Tomato	cytosol	31.31	25.98
Solyc04g054650.1.1	Tomato	cytosol	33.67	20.58

Protein Annotations

EnsemblPlants:Bra009546.1	EnsemblPlants:Bra009546.1-P	EnsemblPlantsGene:Bra009546	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547C27	UniProt:M4CZ99	MapMan:35.1

Description

AT5G03200 (E=2e-086) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:+:17178704..17179801

Molecular Weight (calculated)

33059.7 Da

IEP (calculated)

4.866

GRAVY (calculated)

-0.292

Length

297 amino acids

Sequence
(BLAST)

001: MENIFCCCGG RRRRSNVPPE ATETTPPQPH PPKIPVNQSV SSAATSYYPP GTMSKPYDHP MPPPRDVVDE NPVTIRNDTN LMKETLSLEP DPVNPGRLLV
101: AFTFDALVSG RITVVFFAKE VPEFQLTATK ADTLQPITFD FEKGLDQKFI QPSGTGVDLS AFEDSELFKE AETDIFPLAI NLEAAPEGGK SSRCMQITQV
201: TYVKEDGEIK PSVIKQFISV NGTRYELQDI YGIGDAVDEN ARKECVICLS EPRDVLVLPC RHMCMCVGCA KELRFQTNLC PVCRQPVERL LKIPLKY

Best Arabidopsis Sequence Match ( AT5G03200.1 )
(BLAST)

001: MGNLISLIFC CGRRQRSNIP PAMETAPLEL PPNRFVFAAV PPYLNPNPNY VDQYPGNCLP PPVTEPPMLP YNFNHLHHYP PNSYQLPHPL FHGGRYPILP
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG

Arabidopsis Description

LUL1Probable E3 ubiquitin-protein ligase LUL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.