Factsheet for Os01t0374900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02
Os06t0654400-00
Os08t0249200-00
Os08t0446800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	Os06t0654400-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0249200-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0446800-01	AT2G24762.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G31730.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0249200-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0446800-01	AT4G31730.1	24036454
AT3G53410.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G53410.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G53410.1	Os06t0654400-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0249200-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0446800-01	AT5G57685.1	22291198
AT5G03200.1	Os06t0654400-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0249200-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0446800-01	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G390000.1	Wheat	mitochondrion	63.26	71.74
TraesCS7D01G473200.1	Wheat	cytosol	68.69	70.96
TraesCS7A01G486700.1	Wheat	cytosol	68.37	70.63
HORVU7Hr1G109550.2	Barley	cytosol	68.05	64.74
CDX70325	Canola	cytosol	17.57	53.4
GSMUA_Achr11P...	Banana	cytosol	47.28	50.0
CDY41587	Canola	cytosol	41.53	47.27
GSMUA_Achr5P14690_001	Banana	cytosol	46.33	47.23
GSMUA_Achr7P01960_001	Banana	cytosol	46.01	47.06
Bra003133.1-P	Field mustard	nucleus	42.17	45.67
CDY67386	Canola	cytosol	42.17	45.67
CDY13299	Canola	cytosol	41.21	43.88
AT3G53410.1	Thale cress	cytosol	41.85	43.81
KRH19856	Soybean	nucleus	48.56	43.55
PGSC0003DMT400027153	Potato	nucleus, plastid	43.45	42.9
KRH32464	Soybean	plastid	47.28	42.41
Solyc10g086080.1.1	Tomato	nucleus	44.41	41.49
KRH05126	Soybean	cytosol	12.78	41.24
Solyc10g084100.1.1	Tomato	nucleus, plastid	41.85	41.07
KRH22903	Soybean	mitochondrion, nucleus	39.94	40.45
VIT_08s0040g01940.t01	Wine grape	cytosol	46.65	40.33
CDY44348	Canola	cytosol	33.87	40.3
PGSC0003DMT400045328	Potato	plastid	45.05	40.29
PGSC0003DMT400004461	Potato	plastid	46.65	40.22
Solyc09g007700.2.1	Tomato	plastid	46.33	40.06
VIT_06s0004g02970.t01	Wine grape	mitochondrion	44.41	39.83
Bra009546.1-P	Field mustard	cytosol	37.06	39.06
CDY22203	Canola	mitochondrion, plastid	46.33	38.98
CDY10400	Canola	cytosol	37.06	38.93
GSMUA_Achr2P12340_001	Banana	nucleus	49.52	38.85
Bra034086.1-P	Field mustard	nucleus, plastid	46.01	38.81
KRH67682	Soybean	nucleus	42.17	38.71
CDY41312	Canola	plastid	45.69	38.44
Bra028846.1-P	Field mustard	cytosol	32.59	38.35
CDY62899	Canola	cytosol	32.59	38.35
KRG95976	Soybean	plastid	44.41	37.98
Bra029788.1-P	Field mustard	nucleus, plastid	45.69	37.53
Os10t0204100-01	Rice	nucleus	50.8	37.41
CDY44729	Canola	plastid	45.37	36.5
AT3G09770.1	Thale cress	plastid	44.73	36.08
AT5G03200.1	Thale cress	mitochondrion	38.34	35.61
Os05t0397650-00	Rice	nucleus	39.3	34.65
CDX70324	Canola	cytosol	18.21	33.93
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	46.65	30.35
Solyc04g054680.1.1	Tomato	cytosol	27.8	24.3
Solyc04g054650.1.1	Tomato	cytosol	31.63	20.37

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4325441	ProteinID:BAB61152.1	ProteinID:BAF04989.1	ProteinID:BAS72200.1
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os01g0374900	EnsemblPlants:Os01t0374900-01	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR22996	PANTHER:PTHR22996:SF6	UniProt:Q94E82	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00000A8AC5
RefSeq:XP_015620870.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0374900-01)

Coordinates

chr1:+:15453686..15457657

Molecular Weight (calculated)

34142.3 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.451

Length

313 amino acids

Sequence
(BLAST)

001: MGNIASSGGA SPRPPPPHLE AYRHGVPPPY YHSYPRPPPG AAAPPPVPVP AHVERHRAVA VSVGVNVKGD TLRLVPDDDD DDGRSLLLAF SFDADGPGSI
101: TVCFFAQEDK CALKTAKENL LQPVTVPFKE GRGQEFKQPS GSGIDVSRFE ESELTNVGEG GVFPVAFKVQ MDVSGNQESE GAHETEQSKY LVKYAIFVKK
201: DNAEYGVHVV QQILWVNGIR YVLQEIYGIG NTADKNAHED DSGKECVVCL SEPRDTAVLP CRHMCLCREC AQVLKYQTNK CPICRQPVEG LREIEVDNKP
301: IPQQGSQQLT APQ

Best Arabidopsis Sequence Match ( AT3G53410.1 )
(BLAST)

001: MGNVISGGSR PENHRDRTSP PYPNPNAQYQ GNYPSPYQDC ARYPYGEMAS PVQYVEHQEA VTIRNDINLK KETLRLEPDE QNPGKFLLSF TFDASVPGSI
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN

Arabidopsis Description

LUL2Probable E3 ubiquitin-protein ligase LUL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.