Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 91.22 | 91.8 |
| Solyc09g007700.2.1 | Tomato | plastid | 77.43 | 68.23 |
| CDY41587 | Canola | cytosol | 55.49 | 64.36 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 72.41 | 63.81 |
| Solyc10g086080.1.1 | Tomato | nucleus | 66.77 | 63.58 |
| CDX70325 | Canola | cytosol | 20.38 | 63.11 |
| KRH32464 | Soybean | plastid | 64.58 | 59.03 |
| KRH19856 | Soybean | nucleus | 63.95 | 58.45 |
| Zm00001d015671_P001 | Maize | cytosol | 41.07 | 58.22 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 55.49 | 57.65 |
| GSMUA_Achr11P... | Banana | cytosol | 52.66 | 56.76 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 54.23 | 56.54 |
| KRH67682 | Soybean | nucleus | 59.87 | 56.01 |
| AT3G53410.1 | Thale cress | cytosol | 51.41 | 54.85 |
| CDY41312 | Canola | plastid | 63.01 | 54.03 |
| CDY22203 | Canola | mitochondrion, plastid | 63.01 | 54.03 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 62.7 | 53.91 |
| KRG95976 | Soybean | plastid | 61.76 | 53.83 |
| AT3G09770.1 | Thale cress | plastid | 65.2 | 53.61 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 66.46 | 53.13 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 62.7 | 52.49 |
| CDY67386 | Canola | cytosol | 46.71 | 51.56 |
| Bra003133.1-P | Field mustard | nucleus | 46.71 | 51.56 |
| CDY44729 | Canola | plastid | 62.38 | 51.16 |
| Bra009546.1-P | Field mustard | cytosol | 47.34 | 50.84 |
| CDY13299 | Canola | cytosol | 46.71 | 50.68 |
| Zm00001d028475_P002 | Maize | cytosol | 63.32 | 50.5 |
| EER92535 | Sorghum | nucleus | 63.32 | 50.25 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 63.64 | 50.12 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 63.64 | 50.12 |
| CDY10400 | Canola | cytosol | 46.71 | 50.0 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 63.32 | 49.88 |
| KRH05126 | Soybean | cytosol | 14.73 | 48.45 |
| Os10t0204100-01 | Rice | nucleus | 64.26 | 48.24 |
| Bra028846.1-P | Field mustard | cytosol | 40.13 | 48.12 |
| CDY62899 | Canola | cytosol | 40.13 | 48.12 |
| CDY44348 | Canola | cytosol | 39.5 | 47.91 |
| AT5G03200.1 | Thale cress | mitochondrion | 50.47 | 47.77 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 40.75 | 47.1 |
| Solyc01g080080.2.1 | Tomato | nucleus | 22.88 | 46.79 |
| CDX70324 | Canola | cytosol | 24.45 | 46.43 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 60.19 | 45.28 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 42.63 | 44.88 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 42.32 | 44.55 |
| Os01t0374900-01 | Rice | plastid | 41.07 | 41.85 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 60.81 | 40.33 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 41.38 | 40.12 |
| Solyc04g054680.1.1 | Tomato | cytosol | 40.13 | 35.75 |
| Solyc01g098750.2.1 | Tomato | plastid | 42.01 | 34.72 |
| Solyc04g054650.1.1 | Tomato | cytosol | 42.32 | 27.78 |
Protein Annotations
| EnsemblPlants:Solyc10g084100.1.1 | EnsemblPlantsGene:Solyc10g084100.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000276A251 | UniProt:K4D3J6 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr10:-:63760676..63762813
Molecular Weight (calculated)
35422.3 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.437
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAGSRGVN GPRRRNSRRS HPPPPPPPPQ PEIRANGYVF AATPYLSRFP HGPSYYQYPG YYSTPPPPPR PRAMAAPYVL HQKAVTIRND VNLKKETLKI
101: EPDEKNPGKY LVAFTFDATV SGSLTVIFFG KEGEDCLLTP MKESLLLPIT VEFQQGLSQK FRQPSGTGID LSIFDEAESS IYADADVYPL AVKLEAIPGK
201: ESVPEDENAV SGSTNSQLTL AVFEKDKGEY NVRVVKQILW VNGMRYELQE IYGIGDSIDN EFDGNDPGKE CVICLAEPRD TTVLPCRHMC MCSGCAKVLR
301: IQTNRCPICR QPVERLLEI
101: EPDEKNPGKY LVAFTFDATV SGSLTVIFFG KEGEDCLLTP MKESLLLPIT VEFQQGLSQK FRQPSGTGID LSIFDEAESS IYADADVYPL AVKLEAIPGK
201: ESVPEDENAV SGSTNSQLTL AVFEKDKGEY NVRVVKQILW VNGMRYELQE IYGIGDSIDN EFDGNDPGKE CVICLAEPRD TTVLPCRHMC MCSGCAKVLR
301: IQTNRCPICR QPVERLLEI
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.