Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015671_P001 | Maize | cytosol | 55.0 | 97.78 |
| EER92535 | Sorghum | nucleus | 93.0 | 92.54 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 81.75 | 80.74 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 81.75 | 80.74 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 81.5 | 80.49 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 77.5 | 73.11 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 54.0 | 70.36 |
| GSMUA_Achr11P... | Banana | cytosol | 50.5 | 68.24 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 51.5 | 67.32 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 60.75 | 67.13 |
| PGSC0003DMT400004461 | Potato | plastid | 60.75 | 66.94 |
| Solyc09g007700.2.1 | Tomato | plastid | 60.5 | 66.85 |
| CDY41587 | Canola | cytosol | 44.75 | 65.09 |
| KRH32464 | Soybean | plastid | 56.0 | 64.18 |
| CDX70325 | Canola | cytosol | 16.5 | 64.08 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 63.25 | 63.41 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 50.5 | 63.32 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 76.0 | 63.2 |
| KRH19856 | Soybean | nucleus | 55.0 | 63.04 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 49.75 | 62.78 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 54.5 | 62.46 |
| Solyc10g086080.1.1 | Tomato | nucleus | 50.75 | 60.6 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 56.5 | 59.32 |
| PGSC0003DMT400045328 | Potato | plastid | 51.75 | 59.14 |
| AT3G53410.1 | Thale cress | cytosol | 43.75 | 58.53 |
| CDY44729 | Canola | plastid | 56.75 | 58.35 |
| AT3G09770.1 | Thale cress | plastid | 56.0 | 57.73 |
| CDY41312 | Canola | plastid | 53.25 | 57.26 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 53.0 | 57.14 |
| CDY22203 | Canola | mitochondrion, plastid | 53.0 | 56.99 |
| KRG95976 | Soybean | plastid | 52.0 | 56.83 |
| Bra003133.1-P | Field mustard | nucleus | 40.5 | 56.06 |
| CDY67386 | Canola | cytosol | 40.5 | 56.06 |
| KRH67682 | Soybean | nucleus | 47.75 | 56.01 |
| CDY13299 | Canola | cytosol | 40.25 | 54.76 |
| KRH22903 | Soybean | mitochondrion, nucleus | 41.75 | 54.05 |
| KRH05126 | Soybean | cytosol | 13.0 | 53.61 |
| CDY10400 | Canola | cytosol | 38.25 | 51.34 |
| Bra009546.1-P | Field mustard | cytosol | 38.0 | 51.18 |
| AT5G03200.1 | Thale cress | mitochondrion | 43.0 | 51.04 |
| CDY44348 | Canola | cytosol | 33.25 | 50.57 |
| CDY62899 | Canola | cytosol | 33.0 | 49.62 |
| Bra028846.1-P | Field mustard | cytosol | 33.0 | 49.62 |
| CDX70324 | Canola | cytosol | 20.5 | 48.81 |
| Zm00001d038127_P001 | Maize | nucleus | 37.0 | 44.05 |
| Solyc04g054680.1.1 | Tomato | cytosol | 31.25 | 34.92 |
| Solyc04g054650.1.1 | Tomato | cytosol | 34.0 | 27.98 |
Protein Annotations
| EnsemblPlants:Zm00001d028475_P002 | EnsemblPlants:Zm00001d028475_T002 | EnsemblPlantsGene:Zm00001d028475 | EntrezGene:103633744 | Gene3D:3.30.40.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 | ProteinID:ONL96146.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002208CBD | UniProt:A0A096UDI7 | MapMan:35.1 | : |
Description
Probable E3 ubiquitin-protein ligase LOG2
Coordinates
chr1:+:36212146..36216035
Molecular Weight (calculated)
44538.5 Da
IEP (calculated)
6.224
GRAVY (calculated)
-0.699
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAGSNGGG AAAGHRRRSS GHGHHHQAPP PHQPQETAAN RYVFAAATPY PPQYPNPNPP QYYPQYGNYY PPPPPSVPVP LPAPYDHHHR PPTAAPGEFP
101: PPPLTHPHHY PGWAGRYPSY GQHLPMPTPY VEHQKAVTIR NDVNLKKETL RIEPDEECPG HFLVAFTFDA TVAGSMTVYL FAKEELNCNL TAVKEDLMKP
201: VTVSFKEGLG QKFRQPSGTG IDFSVFEESD LLKQGDMDVY PLAVKAETTL LVDHPPEGDD QKMKTPNSQI TQAVFEKKEN GDYHVRVVCQ ILWVNGTRYE
301: LQEIYGIGNS VEGDADANDP GKECVICLSE PRDTTVLPCR HMCMCSECAK VLRYQTTRCP ICRQPVERLL EIKVNNKSED QQQMPQSPPL PALDPQQEEV
101: PPPLTHPHHY PGWAGRYPSY GQHLPMPTPY VEHQKAVTIR NDVNLKKETL RIEPDEECPG HFLVAFTFDA TVAGSMTVYL FAKEELNCNL TAVKEDLMKP
201: VTVSFKEGLG QKFRQPSGTG IDFSVFEESD LLKQGDMDVY PLAVKAETTL LVDHPPEGDD QKMKTPNSQI TQAVFEKKEN GDYHVRVVCQ ILWVNGTRYE
301: LQEIYGIGNS VEGDADANDP GKECVICLSE PRDTTVLPCR HMCMCSECAK VLRYQTTRCP ICRQPVERLL EIKVNNKSED QQQMPQSPPL PALDPQQEEV
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.