Subcellular Localization
min:
: max
Winner_takes_all: plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41312 | Canola | plastid | 94.09 | 94.09 |
| CDY41587 | Canola | cytosol | 60.22 | 81.45 |
| CDY44729 | Canola | plastid | 73.12 | 69.92 |
| AT3G09770.1 | Thale cress | plastid | 71.77 | 68.81 |
| CDX70325 | Canola | cytosol | 18.55 | 66.99 |
| PGSC0003DMT400004461 | Potato | plastid | 62.1 | 63.64 |
| Solyc09g007700.2.1 | Tomato | plastid | 61.83 | 63.54 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 54.03 | 63.01 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 53.49 | 62.78 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 59.95 | 61.6 |
| KRH32464 | Soybean | plastid | 57.26 | 61.03 |
| Solyc10g086080.1.1 | Tomato | nucleus | 54.3 | 60.3 |
| PGSC0003DMT400045328 | Potato | plastid | 56.72 | 60.29 |
| KRH19856 | Soybean | nucleus | 56.45 | 60.17 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 49.46 | 59.93 |
| Zm00001d015671_P001 | Maize | cytosol | 35.75 | 59.11 |
| CDY44348 | Canola | cytosol | 41.67 | 58.94 |
| CDX70324 | Canola | cytosol | 26.34 | 58.33 |
| CDY62899 | Canola | cytosol | 41.4 | 57.89 |
| GSMUA_Achr11P... | Banana | cytosol | 45.97 | 57.77 |
| CDY67386 | Canola | cytosol | 44.62 | 57.44 |
| CDY10400 | Canola | cytosol | 45.97 | 57.38 |
| CDY13299 | Canola | cytosol | 45.16 | 57.14 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 46.77 | 56.86 |
| KRH67682 | Soybean | nucleus | 51.88 | 56.6 |
| CDY13950 | Canola | cytosol | 15.05 | 56.57 |
| KRG95976 | Soybean | plastid | 54.03 | 54.92 |
| EER92535 | Sorghum | nucleus | 57.8 | 53.48 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 58.06 | 53.33 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 56.99 | 53.13 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 57.8 | 53.09 |
| Zm00001d028475_P002 | Maize | cytosol | 56.99 | 53.0 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 57.53 | 52.84 |
| Os10t0204100-01 | Rice | nucleus | 58.87 | 51.53 |
| KRH05126 | Soybean | cytosol | 13.17 | 50.52 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 55.91 | 49.06 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 36.29 | 48.91 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 38.71 | 47.52 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 38.44 | 47.19 |
| Os01t0374900-01 | Rice | plastid | 38.98 | 46.33 |
| CDY13958 | Canola | cytosol | 23.66 | 45.83 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 55.11 | 42.62 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 37.1 | 41.95 |
| CDY24715 | Canola | mitochondrion | 37.63 | 38.57 |
| CDX92559 | Canola | mitochondrion | 38.44 | 38.44 |
| CDY05235 | Canola | mitochondrion | 37.63 | 38.36 |
| CDY13949 | Canola | mitochondrion | 38.44 | 37.05 |
| Solyc04g054680.1.1 | Tomato | cytosol | 34.41 | 35.75 |
| Solyc04g054650.1.1 | Tomato | cytosol | 35.48 | 27.16 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078GBY3 | UniProt:A0A078GBY3 | EnsemblPlants:CDY22203 | ProteinID:CDY22203 |
| ProteinID:CDY22203.1 | EnsemblPlantsGene:GSBRNA2T00018622001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PFscan:PS50089 |
| PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDC332 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC01g38980DBnaC01g38980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBY3]
Coordinates
chrLK032128:-:526229..527642
Molecular Weight (calculated)
40813.0 Da
IEP (calculated)
5.847
GRAVY (calculated)
-0.657
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNISSSTGG DGRRRRQQRR SNTLPTSSPS PSPPPPPPSL PPPNRIVFAA ATPYPNPNYQ YPGYYPPPPP GPYDQHHHIH YPPPPQHPYY GRYPYNGPMM
101: PPQLPCVEHQ KAVTIRNDVN LKKESLKLEP DPDNPGRVLV SFTFDATVSG RITVIFFAKE TEQCVLTATK EDTLPPITMD FERGLGQKFK QPPGSGIDLS
201: LFEDSELFKA AALETDVYPL AVKAEAVSSG EESLSKNAQI TQAVYEKDKG EVKIRVVKQI LWVNGTRYEL QEIYGIGNTV GGDDDGDEDG DDQGKECVIC
301: LSEPSDTTVL PCRHMCMCSG CAKVLRFQTN RCPICRQPVE RLLEIQVHGN SGSGNDAEQG GGTAETRVAN HG
101: PPQLPCVEHQ KAVTIRNDVN LKKESLKLEP DPDNPGRVLV SFTFDATVSG RITVIFFAKE TEQCVLTATK EDTLPPITMD FERGLGQKFK QPPGSGIDLS
201: LFEDSELFKA AALETDVYPL AVKAEAVSSG EESLSKNAQI TQAVYEKDKG EVKIRVVKQI LWVNGTRYEL QEIYGIGNTV GGDDDGDEDG DDQGKECVIC
301: LSEPSDTTVL PCRHMCMCSG CAKVLRFQTN RCPICRQPVE RLLEIQVHGN SGSGNDAEQG GGTAETRVAN HG
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.