Factsheet for Os10t0204100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02
Os06t0654400-00
Os08t0249200-00
Os08t0446800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	Os06t0654400-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0249200-00	AT2G24762.1	22291198
AT3G09770.1	Os08t0446800-01	AT2G24762.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0249200-00	AT4G31730.1	22291198
AT3G09770.1	Os08t0446800-01	AT4G31730.1	22291198
AT3G09770.1	Os06t0654400-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0249200-00	AT4G31730.1	24036454
AT3G09770.1	Os08t0446800-01	AT4G31730.1	24036454
AT3G53410.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G53410.1	Os06t0654400-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0249200-00	AT4G25760.1	22291198
AT3G53410.1	Os08t0446800-01	AT4G25760.1	22291198
AT3G53410.1	Os06t0654400-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0249200-00	AT5G57685.1	22291198
AT3G53410.1	Os08t0446800-01	AT5G57685.1	22291198
AT5G03200.1	Os06t0654400-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0249200-00	AT4G31730.1	22291198
AT5G03200.1	Os08t0446800-01	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14690_001	Banana	cytosol	53.65	74.27
GSMUA_Achr7P01960_001	Banana	cytosol	51.53	71.57
VIT_08s0040g01940.t01	Wine grape	cytosol	58.35	68.51
GSMUA_Achr11P...	Banana	cytosol	47.53	68.24
PGSC0003DMT400004461	Potato	plastid	57.65	67.49
Solyc09g007700.2.1	Tomato	plastid	57.41	67.4
CDY41587	Canola	cytosol	43.53	67.27
GSMUA_Achr2P12340_001	Banana	nucleus	62.35	66.42
PGSC0003DMT400027153	Potato	nucleus, plastid	48.47	64.98
Solyc10g084100.1.1	Tomato	nucleus, plastid	48.24	64.26
CDX70325	Canola	cytosol	15.53	64.08
KRH32464	Soybean	plastid	52.47	63.9
KRH19856	Soybean	nucleus	51.76	63.04
VIT_06s0004g02970.t01	Wine grape	mitochondrion	50.59	61.6
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	69.18	61.12
Solyc10g086080.1.1	Tomato	nucleus	48.0	60.9
Bra029788.1-P	Field mustard	nucleus, plastid	53.41	59.58
PGSC0003DMT400045328	Potato	plastid	48.94	59.43
CDY22203	Canola	mitochondrion, plastid	51.53	58.87
CDY44729	Canola	plastid	53.88	58.87
CDY41312	Canola	plastid	51.29	58.6
Bra034086.1-P	Field mustard	nucleus, plastid	51.06	58.49
AT3G53410.1	Thale cress	cytosol	40.47	57.53
AT3G09770.1	Thale cress	plastid	52.47	57.47
KRH67682	Soybean	nucleus	44.94	56.01
Bra003133.1-P	Field mustard	nucleus	37.88	55.71
CDY67386	Canola	cytosol	37.88	55.71
KRH05126	Soybean	cytosol	12.47	54.64
CDY13299	Canola	cytosol	37.65	54.42
CDY44348	Canola	cytosol	33.65	54.37
KRG95976	Soybean	plastid	46.12	53.55
Bra009546.1-P	Field mustard	cytosol	37.18	53.2
KRH22903	Soybean	mitochondrion, nucleus	38.35	52.75
CDY62899	Canola	cytosol	32.94	52.63
Bra028846.1-P	Field mustard	cytosol	32.94	52.63
AT5G03200.1	Thale cress	mitochondrion	41.65	52.52
CDY10400	Canola	cytosol	36.47	52.01
Os01t0374900-01	Rice	plastid	37.41	50.8
CDX70324	Canola	cytosol	20.0	50.6
Os05t0397650-00	Rice	nucleus	34.82	41.69
Solyc04g054680.1.1	Tomato	cytosol	30.82	36.59
Solyc04g054650.1.1	Tomato	cytosol	32.71	28.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4348266	ProteinID:AAL86506.1	ProteinID:AAM18751.1	ProteinID:AAP52712.1
ProteinID:BAF26220.1	ProteinID:BAT10246.1	InterPro:E3ligase_BOI_like	ProteinID:EEE50718.1	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlantsGene:Os10g0204100	EnsemblPlants:Os10t0204100-01	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR22996
PANTHER:PTHR22996:SF0	UniProt:Q8RUJ8	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000009D67B	RefSeq:XP_015614705.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0204100-01)

Coordinates

chr10:-:7414709..7419483

Molecular Weight (calculated)

47350.6 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.848

Length

425 amino acids

Sequence
(BLAST)

001: MGNMGSSGGH RRRNNGHGRH HHHGQPTAPP PPPQQQQQEV APNRYVFAAA SPYPPQYPNP NLPQYYPQYG NFYPPPPPSM PGPLPAPYDH HHRGGGPAQP
101: PPPPPPPQPI HAAGEFPPAM LQQHPHYHGW GGNFSYGPPT QPPAPAPPYV EHQKAVTIRN DVNLKKETLR VEPDDECPGR FLITFTFDAT VAGSMTVYFF
201: AKEELNCNLT ATKEDLLKPV TVTFKEGLGQ KFRQPSGTGI DFSLFEDAEL FKEGEMDVYP LAVKAETTFS IGQFSEGEEQ KSQTPNSQIT QAVFERKENG
301: DYHVRVVKQI LWVNGTRYEL QEIYGIGNSV EGDTEGNDPG KECVICLSEP RDTTVLPCRH MCMCSECAKV LRYQTNRCPI CRQPVERLLE IKVNNKGEEQ
401: QQQQIPQPPP PPSTAPPHQQ QESQA

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.