Factsheet for Os05t0397650-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0654400-00
Os07t0112300-00
Os07t0112400-00
Os08t0249200-00
Os08t0446800-01
Os09t0248200-01
Os09t0248300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	Os07t0112300-00	AT3G12470.1	21798944
AT5G19080.1	Os07t0112400-00	AT3G12470.1	21798944
AT5G19080.1	Os06t0654400-00	AT4G25760.1	22291198
AT5G19080.1	Os08t0249200-00	AT4G25760.1	22291198
AT5G19080.1	Os08t0446800-01	AT4G25760.1	22291198
AT5G19080.1	Os09t0248200-01	AT5G48385.1	21798944
AT5G19080.1	Os09t0248300-01	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G258900.1	Wheat	cytosol	51.83	80.7
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	46.48	80.1
EES19487	Sorghum	nucleus	74.93	78.24
Zm00001d038127_P001	Maize	nucleus	72.68	76.79
CDY13950	Canola	cytosol	16.34	58.59
GSMUA_Achr3P09070_001	Banana	cytosol	43.66	56.36
CDY13958	Canola	cytosol	29.3	54.17
KRH51029	Soybean	mitochondrion	44.23	46.73
KRH20904	Soybean	mitochondrion	48.17	46.09
KRH11381	Soybean	mitochondrion	47.89	45.58
Solyc01g080080.2.1	Tomato	nucleus	20.0	45.51
KRH02118	Soybean	cytosol, mitochondrion	35.21	45.29
Bra002208.1-P	Field mustard	mitochondrion, nucleus	47.04	44.65
CDX92559	Canola	mitochondrion	46.76	44.62
AT3G06140.1	Thale cress	mitochondrion	45.07	44.57
CDY13949	Canola	mitochondrion	47.61	43.78
VIT_05s0020g02680.t01	Wine grape	mitochondrion	48.17	43.62
CDY05235	Canola	mitochondrion	44.79	43.56
AT5G19080.1	Thale cress	cytosol	46.2	43.39
Bra020773.1-P	Field mustard	mitochondrion	43.94	42.98
CDY24715	Canola	mitochondrion	43.66	42.7
PGSC0003DMT400073576	Potato	plastid	45.63	42.08
Solyc01g098750.2.1	Tomato	plastid	45.07	41.45
Os01t0374900-01	Rice	plastid	34.65	39.3
VIT_14s0128g00180.t01	Wine grape	mitochondrion	45.07	35.96
Os10t0204100-01	Rice	nucleus	41.69	34.82
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	43.38	32.02

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:9266835	UniProt:A0A0P0WLY2	ProteinID:BAS93893.1	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os05g0397650	EnsemblPlants:Os05t0397650-00	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996
PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF101447	SUPFAM:SSF57850	UniParc:UPI0001C7D3A8	RefSeq:XP_015639658.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING finger protein OsRFPHC-8, RING-HC protein 8Similar to zinc finger (C3HC4-type RING finger) family protein. (Os05t0397650-00)

Coordinates

chr5:-:19340923..19345332

Molecular Weight (calculated)

40070.1 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.811

Length

355 amino acids

Sequence
(BLAST)

001: MGGSSSTSRR RRDEYYAARP PPPPHHYYTY PPPPPPPPHH HHHPPPPPPP PHHHHQHPYR PPPPPHHATS SSSYYYHHPP PPHAYHGPWH PAPRPPHPEQ
101: PALTGPPPEF VDHQQARKVK NDVNLHKDTI RLVPDVTDPD RRLVAFTFDA VTDGSITIYY FGKEGKNCTF SSVYPELQTP TKIPFQKGLA QKFVQTSGSG
201: VDLGFFSLDE LSNPSGEVFP LVVYAEACPP PEESHQPNST RAQITLAVIE KHHNDLRVKV VKQMLWSDGE KYELQEIYGI VNSTEADVPD ADDSDMGKEC
301: VICLTEPRDT AVFPCRHLCM CSECAKTLRF QTDKCPICRQ PVEKLMEIKV RSPEP

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.