Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05235 | Canola | mitochondrion | 78.27 | 76.99 |
| Bra020773.1-P | Field mustard | mitochondrion | 76.88 | 76.03 |
| CDY24715 | Canola | mitochondrion | 76.88 | 76.03 |
| AT5G19080.1 | Thale cress | cytosol | 61.84 | 58.73 |
| TraesCS1B01G258900.1 | Wheat | cytosol | 34.26 | 53.95 |
| HORVU1Hr1G062460.2 | Barley | cytosol, nucleus | 30.92 | 53.88 |
| KRH51029 | Soybean | mitochondrion | 49.58 | 52.98 |
| GSMUA_Achr3P09070_001 | Banana | cytosol | 40.11 | 52.36 |
| Solyc01g080080.2.1 | Tomato | nucleus | 22.56 | 51.92 |
| KRH02118 | Soybean | cytosol, mitochondrion | 39.0 | 50.72 |
| KRH20904 | Soybean | mitochondrion | 52.09 | 50.4 |
| KRH11381 | Soybean | mitochondrion | 52.37 | 50.4 |
| VIT_05s0020g02680.t01 | Wine grape | mitochondrion | 54.32 | 49.74 |
| EES19487 | Sorghum | nucleus | 44.29 | 46.76 |
| PGSC0003DMT400073576 | Potato | plastid | 48.75 | 45.45 |
| Os05t0397650-00 | Rice | nucleus | 44.57 | 45.07 |
| Zm00001d038127_P001 | Maize | nucleus | 42.06 | 44.94 |
| AT3G53410.1 | Thale cress | cytosol | 35.65 | 42.81 |
| AT3G09770.1 | Thale cress | plastid | 39.28 | 36.34 |
| AT5G03200.1 | Thale cress | mitochondrion | 32.03 | 34.12 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:819787 | ProteinID:AAF30307.1 | ProteinID:AEE74350.1 | ArrayExpress:AT3G06140 |
| EnsemblPlantsGene:AT3G06140 | RefSeq:AT3G06140 | TAIR:AT3G06140 | RefSeq:AT3G06140-TAIR-G | EnsemblPlants:AT3G06140.1 | TAIR:AT3G06140.1 |
| EMBL:AY088059 | Unigene:At.27569 | EMBL:BT028998 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_566274.1 |
| PFAM:PF13920 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007103 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50089 | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 |
| UniProt:Q8LA32 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A64D0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
Coordinates
chr3:-:1856682..1858946
Molecular Weight (calculated)
41007.3 Da
IEP (calculated)
6.337
GRAVY (calculated)
-0.657
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.