CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020773.1-P	Field mustard	mitochondrion	98.9	98.9
CDY05235	Canola	mitochondrion	91.74	91.23
AT3G06140.1	Thale cress	mitochondrion	76.03	76.88
CDY13958	Canola	cytosol	35.81	67.71
CDY13950	Canola	cytosol	18.18	66.67
CDX92559	Canola	mitochondrion	60.61	59.14
CDY13949	Canola	mitochondrion	60.88	57.25
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	30.58	53.88
TraesCS1B01G258900.1	Wheat	cytosol	33.61	53.51
KRH51029	Soybean	mitochondrion	49.31	53.27
Solyc01g080080.2.1	Tomato	nucleus	22.59	52.56
GSMUA_Achr3P09070_001	Banana	cytosol	38.84	51.27
CDX70325	Canola	cytosol	14.05	49.51
KRH20904	Soybean	mitochondrion	50.41	49.33
KRH02118	Soybean	cytosol, mitochondrion	37.19	48.91
KRH11381	Soybean	mitochondrion	49.86	48.53
EES19487	Sorghum	nucleus	44.9	47.94
VIT_05s0020g02680.t01	Wine grape	mitochondrion	51.24	47.45
PGSC0003DMT400073576	Potato	plastid	49.59	46.75
Zm00001d038127_P001	Maize	nucleus	41.32	44.64
CDY41587	Canola	cytosol	33.61	44.36
Os05t0397650-00	Rice	nucleus	42.7	43.66
CDY67386	Canola	cytosol	34.44	43.25
CDY13299	Canola	cytosol	33.33	41.16
CDY44348	Canola	cytosol	28.65	39.54
CDY10400	Canola	cytosol	31.41	38.26
CDY44729	Canola	plastid	40.77	38.05
CDY41312	Canola	plastid	38.57	37.63
CDY22203	Canola	mitochondrion, plastid	38.57	37.63
CDY62899	Canola	cytosol	27.55	37.59
CDX70324	Canola	cytosol	16.25	35.12

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078GDU8	UniProt:A0A078GDU8	EnsemblPlants:CDY24715	ProteinID:CDY24715
ProteinID:CDY24715.1	EnsemblPlantsGene:GSBRNA2T00027104001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDBAEF	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA05g31140DBnaA05g31140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDU8]

Coordinates

chrLK032162:+:594857..596555

Molecular Weight (calculated)

41293.8 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.583

Length

363 amino acids

Sequence
(BLAST)

001: MGISFSTNRR RQSNRRHLLH HHPPPPYYYL DPPPPPQPFP PHYDYNYSTY HIPPPLPPPP QINSCSYGHP YHYYPQHPQY LTTAQPNWWG PTMRPGFVCP
101: PQPQTQMQPL PPPYVENQNA KKVRNDVNVH RDKVRLEVDD LVPGHHLVSF VFDAIFHGSF TITFFAKEEP NCTFIPQFPE VYPPTRFSFQ KGPGQRFLQP
201: SGTGTDLSFF ALDDLSKPLE EDVYPLVISA ETVISPNPIS EQSSVHKQVT QAVLEKDSDG SFKVKVVKQI LWIEGVRYEL RELYGSTTQG ASSGLEDGGS
301: GKECVICMTE AKDTAVLPCR HLCMCSDCAK ELRLQSNKCP ICRHPIEELL EINVNSSDEQ HFT

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.