CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH07289
KRH11911
KRH18976
KRH36952
KRH66280
KRH66282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	KRH11911	AT3G12470.1	21798944
AT5G19080.1	KRH36952	AT3G12470.1	21798944
AT5G19080.1	KRH02920	AT4G25760.1	22291198
AT5G19080.1	KRH18976	AT4G25760.1	22291198
AT5G19080.1	KRH07289	AT5G48385.1	21798944
AT5G19080.1	KRH66280	AT5G48385.1	21798944
AT5G19080.1	KRH66282	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51029	Soybean	mitochondrion	78.26	64.29
CDY13950	Canola	cytosol	17.03	47.47
KRH20904	Soybean	mitochondrion	63.41	47.17
KRH11381	Soybean	mitochondrion	63.41	46.92
CDY13958	Canola	cytosol	30.43	43.75
TraesCS1B01G258900.1	Wheat	cytosol	35.87	43.42
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	32.25	43.2
VIT_05s0020g02680.t01	Wine grape	mitochondrion	58.33	41.07
Solyc01g080080.2.1	Tomato	nucleus	22.46	39.74
GSMUA_Achr3P09070_001	Banana	cytosol	39.13	39.27
AT3G06140.1	Thale cress	mitochondrion	50.72	39.0
Bra020773.1-P	Field mustard	mitochondrion	49.28	37.47
CDY24715	Canola	mitochondrion	48.91	37.19
CDY05235	Canola	mitochondrion	48.91	36.99
PGSC0003DMT400073576	Potato	plastid	49.64	35.58
CDX92559	Canola	mitochondrion	47.46	35.22
Os05t0397650-00	Rice	nucleus	45.29	35.21
Bra002208.1-P	Field mustard	mitochondrion, nucleus	47.46	35.03
EES19487	Sorghum	nucleus	42.75	34.71
CDY13949	Canola	mitochondrion	48.19	34.46
AT5G19080.1	Thale cress	cytosol	46.74	34.13
Zm00001d038127_P001	Maize	nucleus	41.3	33.93
KRH19856	Soybean	nucleus	41.67	32.95
KRH32464	Soybean	plastid	41.3	32.66
KRH22903	Soybean	mitochondrion, nucleus	34.42	30.74
KRH67682	Soybean	nucleus	36.59	29.62
KRG95976	Soybean	plastid	38.41	28.96
KRH05126	Soybean	cytosol	8.7	24.74

Protein Annotations

EMBL:ACUP02010294	EnsemblPlants:KRH02118	EnsemblPlantsGene:GLYMA_17G016900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
ProteinID:KRH02118	ProteinID:KRH02118.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0006EDDDDB	UniProt:A0A0R0F765
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:1262509..1264413

Molecular Weight (calculated)

30735.1 Da

IEP (calculated)

5.498

GRAVY (calculated)

-0.470

Length

276 amino acids

Sequence
(BLAST)

001: MGISWSNSNS NSSSRRRRNT YFHPHPPPPY YYHPLPPPPQ GYFVASTNPS ASTTTGYVGP PPPPTQYYPN GFTANSVMPN QGGSGIHASP PPYHKHTLRL
101: HLDPNNPDHH LISFYFDALY DCSITIFYLA KEEEKCWFIP LFPDVFEPIT FPFQKGAGQK FCQPSGTGID LGFFELDDLS RPSPEEDVFS LVICAETTTE
201: LYGIGSSTAA DFDDNDPGKE CVICMTEPKD TAVLTCRHMC MCGDCAKALR PQSNKCLICR QPIEELIEIK INNGNQ

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.